Gene Daci_5265 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5265 
Symbol 
ID5750877 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp5832822 
End bp5834318 
Gene Length1497 bp 
Protein Length498 aa 
Translation table11 
GC content66% 
IMG OID641300390 
Productprotease Do 
Protein accessionYP_001566279 
Protein GI160900697 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTGAGA TGGAAAGGAT GACCATGACC ACTGTTCGAT GGAAGACGCT GCAGTCCTGC 
ACACTGGCCG GCGTTCTGGC GCTGGCTGCA GGCAGCGCAG GAATGCTGGT GCCGGTGAGT
GCCGCCCATG CGCAAAGTGG CGCCGTGGTG AGGGGGCTGC CGGACTTCAC CGATCTGGTC
GAGCAGGTCG GCCCTTCCGT GGTCAACATC CGCACGCTGG AGAAGGTATC CGCCAACTCC
GCCGAGGCGC TGGGCATGGA CGAGGACATG CTCGAATTCT TCCGCCGCTT CGGCCTGCCC
GTGCCCAATG TGCCGCGCCA ACGTCCCCAA CCGCGGTCAC AGCCTGACGA GGAGCAGCCG
CGCGGCGTGG GTTCCGGCTT CATCCTGACG GCCGATGGCT TTGTGATGAC CAATGCCCAC
GTGGTTGAAG GCGCTGACGA GGTCATCGTC ACGCTGACCG ACAAGCGCGA GTTCAAGGCC
AAGATCGTGG GCAGCGACAA GCGCACCGAC GTGGCCGTGG TCAAGATCGA CGCCACAGGG
CTGCCTGCCG TGAAGATCGG CGATGTGAAC CGCCTCAAGG TCGGCGAGTG GGTGATGGCC
ATCGGCTCGC CCTTCGGCCT CGACAACTCC GTCACGGCGG GCATCGTCAG TGCCAAGCAG
CGCGATACGG GCGACTATCT GCCGTTCATC CAGACCGATG TGGCCATCAA CCCCGGCAAC
TCGGGCGGCC CGTTGCTGAA CATGCGCGGC GAGGTCGTGG GCATCAACAG CCAGATCTAT
TCGCGCTCCG GCGGCTTCAT GGGTATCAGC TTCGCGATTC CGATCGATGA GGCCGTGCGT
GTCAGCGACC AGCTGCGCGC CACCGGCAAG GTCACGCGGG GCCGCATTGG CGTGCAGATC
GGTCCGGTCA CCAAGGACAT TGCCGAATCC ATTGGCCTGG GCAAGGCGCA GGGCGCACTG
GTCTCGGCCG TCGAACCGGA TTCGCCCGCT GCCAAGGCGG GCGTCGAGGC CGGTGACGTG
ATCATCAAGT TCGACGGCAA GGCCATCGAC AAGGTGGCCG ACCTGCCGCG CCTGGTGGGC
AATACCAAGC CCGGCACACG CAGCACCATC ACCGTCTTCC GTCGCGGCGC AGCCAAGGAT
CTGACCATGG TGATCGCCGA GGTCGAGCCC GACGGCGCGG CTCCGCAGGC CAAGGCCACC
GGCAAGGGCA GCACCCTGGT TTCCCAGCCG CTGGGCCTGA CGCTGGCCGA GCTCACGGAT
GCCCAGAAGA AGGAGCTGGG CATCAAGGGC GGCGTGCGCG TGACGGCTGC CGTCGAGGCT
GCGGCACGTG CGGGCCTGCG CGAAGGCGAC GTGATCCTGC AACTGGCCAA TGTCGAGATC
ACGGGGCTCA AGAGCTTCGA GGCCACGCTG GCCAAGGTGG ACAAGAGCAA GCCCGTGAAC
CTGCTGGTGC GCCGTGGGGA ATGGGCGCAG TACGTGCTGA TCCGTCCGGC GCGCTGA
 
Protein sequence
MIEMERMTMT TVRWKTLQSC TLAGVLALAA GSAGMLVPVS AAHAQSGAVV RGLPDFTDLV 
EQVGPSVVNI RTLEKVSANS AEALGMDEDM LEFFRRFGLP VPNVPRQRPQ PRSQPDEEQP
RGVGSGFILT ADGFVMTNAH VVEGADEVIV TLTDKREFKA KIVGSDKRTD VAVVKIDATG
LPAVKIGDVN RLKVGEWVMA IGSPFGLDNS VTAGIVSAKQ RDTGDYLPFI QTDVAINPGN
SGGPLLNMRG EVVGINSQIY SRSGGFMGIS FAIPIDEAVR VSDQLRATGK VTRGRIGVQI
GPVTKDIAES IGLGKAQGAL VSAVEPDSPA AKAGVEAGDV IIKFDGKAID KVADLPRLVG
NTKPGTRSTI TVFRRGAAKD LTMVIAEVEP DGAAPQAKAT GKGSTLVSQP LGLTLAELTD
AQKKELGIKG GVRVTAAVEA AARAGLREGD VILQLANVEI TGLKSFEATL AKVDKSKPVN
LLVRRGEWAQ YVLIRPAR