Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_5192 |
Symbol | |
ID | 5750804 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 5757579 |
End bp | 5758010 |
Gene Length | 432 bp |
Protein Length | 143 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641300317 |
Product | fimbrial protein pilin |
Protein accession | YP_001566206 |
Protein GI | 160900624 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4968] Tfp pilus assembly protein PilE |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.373526 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 71 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCGCA CAATGCGCCA CCCTCCTCCC CCGGGCTTCA CACTCATAGA ACTCATGATC GTCGTGGCCG TCATAGTCAT CCTCGGCACC GTCGCCGTGC CCAGCTACAA CGAATACATC CGCGGAGTCC ACCGCGCCGA TGCCCGCGCC GGCCTGCTGC AGGCCCAGCA ATGGCTGGAG CGCGCAGCCA CGGCCAACGG GGTCTACCCC ACCACGCTCC CCGTCGATCT GACCTGGACC CGCGACTCCA GCAAGCGCTA CACCATCAGC CTGGATTCAG GAAACACCAC CGAGGCCTAT ACCCTGATCG CCACGCGCCG AGGCTCACAG ATAGGGGACC GCTGTGGAGA TTTCGCGCTG ACACATACGG GTGTGCGGGA GACACTGAAC CTCGCAACCG GCACCAGCGC GGCGGAATGC TGGTCGCGAT AG
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Protein sequence | MSRTMRHPPP PGFTLIELMI VVAVIVILGT VAVPSYNEYI RGVHRADARA GLLQAQQWLE RAATANGVYP TTLPVDLTWT RDSSKRYTIS LDSGNTTEAY TLIATRRGSQ IGDRCGDFAL THTGVRETLN LATGTSAAEC WSR
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