Gene Daci_5192 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5192 
Symbol 
ID5750804 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp5757579 
End bp5758010 
Gene Length432 bp 
Protein Length143 aa 
Translation table11 
GC content65% 
IMG OID641300317 
Productfimbrial protein pilin 
Protein accessionYP_001566206 
Protein GI160900624 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4968] Tfp pilus assembly protein PilE 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.373526 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones71 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCGCA CAATGCGCCA CCCTCCTCCC CCGGGCTTCA CACTCATAGA ACTCATGATC 
GTCGTGGCCG TCATAGTCAT CCTCGGCACC GTCGCCGTGC CCAGCTACAA CGAATACATC
CGCGGAGTCC ACCGCGCCGA TGCCCGCGCC GGCCTGCTGC AGGCCCAGCA ATGGCTGGAG
CGCGCAGCCA CGGCCAACGG GGTCTACCCC ACCACGCTCC CCGTCGATCT GACCTGGACC
CGCGACTCCA GCAAGCGCTA CACCATCAGC CTGGATTCAG GAAACACCAC CGAGGCCTAT
ACCCTGATCG CCACGCGCCG AGGCTCACAG ATAGGGGACC GCTGTGGAGA TTTCGCGCTG
ACACATACGG GTGTGCGGGA GACACTGAAC CTCGCAACCG GCACCAGCGC GGCGGAATGC
TGGTCGCGAT AG
 
Protein sequence
MSRTMRHPPP PGFTLIELMI VVAVIVILGT VAVPSYNEYI RGVHRADARA GLLQAQQWLE 
RAATANGVYP TTLPVDLTWT RDSSKRYTIS LDSGNTTEAY TLIATRRGSQ IGDRCGDFAL
THTGVRETLN LATGTSAAEC WSR