| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5135 |
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| Symbol | |
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| ID | 5750746 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 5690458 |
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| End bp | 5691939 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641300259 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001566149 |
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| Protein GI | 160900567 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.523851 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.980288 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATCC CATCGCTTTC GAAACTGTCC AGGCGTCTGC TGCCCCTGGT GGCGGCGCTG
GCCCTGGCCG GCTGCGCCAG CGTGTCCCAG AGCCTGCCAG AGCTGCCGGC CGCCCCCGCC
TTCAAGGAGC AGGGCGCCGC GCCGCAGGCG GGCTGGACCC AGGCCCTGCC TGCCGAAGCC
CAGGCACGCG GCCAATGGTG GCTGGCCTTT GCCGACCCGG CGCTGGACGC GCTGGTGGAC
AAGGCCACGC TGGACAACCA GAGCATCCAG GCCGCGGCCG CACGCCTGGC CGAGGCCCGC
GCCCTGGCGC GCAGCGCCAA TGCCGAGCGC CTGCCCCAAC TGGGCCTGGG CGCAGGGGCC
ACGCGCGGCG CGGGGCTGGA CAAGGCCTCG GGCACGCGGC CTGCCACCCT GGTCAATGCG
GGGCTGAACC TGTCCTATGA GGTCGATCTG TTCGGCCGCA TTTCCCAGGC GGCCGACGCA
TCGCGGCTGG ACGCCGAGGG CCGCGAGGCC CTGCTGCAAA GCACGCGGCT GGCCGTGCAG
GCCGAGGTCG CGCAGACCTA TCTGCAGCTG CGCGCACTGG ACGCCGAGCG CGCCCTGATG
CGCGAGACCG TGGAGGCCTA CCGCGACACG CTGCGCCTGT CGGAGCGAAG GCTGCAGGCC
GGCGACATTG CCGAGCTGGA CGTGGCGCGC ATCCAGGCCG AGCTGTCGGC CACCGAATCG
GACGCGCTGG CGCTGGACCG CCAGCGCGCC CAGGTCGAGC ATGCGCTGGC CGTGCTTGTG
GGCGACTCGG CCTCGCGCTT CGGCCTGGGC GAAGGCGCCT GGACCACGGC TCTGCCTTCC
ATCCCAGCCG GCGTGCCGGC CACGGTGCTC ATGCGCCGGC CCGACATCTC GGCTGCGCAG
CGCGCCGTGT TCGCCGCGCA GTCGCGCGTG GGCGTGGCGA AGACGGCATG GTTCCCCAGC
ATCTCGCTGA CCGGCGCGGC CGGCCACGCC TCGCCCGAAG TCGGTGACCT GTTCAAGTGG
TCCATGCGCT CCTGGGGCGT GGGCGCCTTG CTGTCGCTGC CGCTGTTCGA CGGCGGCCGG
CGCGAGGCCG GCGTGCAGGC CGCAGGTGCG CAGCTCGACG CCGCGCTGGC CGCCTACCGC
CAGCAGGCGC TGGTGGCCTT CCAGGAGGTG GAGGACCAGC TGTCATCCAT CCGCATCCTG
CAGGAGCAGT CCACCGTGCA GGGCCAGGCC GTGGTGGCCG CCAAGCGTGC CACCAGCCTT
TCGGACACGC GCTACCGCAA TGGCTACGTC AGCCAGCTGG ACCTGCTGGA TGCCCGCCGC
AGCGAACTGC GCAACCGCCG CCAGGCGCTG CAGGTGAAGT CCGCGCAGTA CCAGGCCGCC
GTGGGCCTGA TCCGCGCGCT GGGCGGGGGC TGGGATGTTC CGGCTGACGC GCCGGCCGGC
GAATCGGCGA ACGTGCCGGT GGCCCAGGCC GCGCTGCGCT GA
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| Protein sequence | MKIPSLSKLS RRLLPLVAAL ALAGCASVSQ SLPELPAAPA FKEQGAAPQA GWTQALPAEA
QARGQWWLAF ADPALDALVD KATLDNQSIQ AAAARLAEAR ALARSANAER LPQLGLGAGA
TRGAGLDKAS GTRPATLVNA GLNLSYEVDL FGRISQAADA SRLDAEGREA LLQSTRLAVQ
AEVAQTYLQL RALDAERALM RETVEAYRDT LRLSERRLQA GDIAELDVAR IQAELSATES
DALALDRQRA QVEHALAVLV GDSASRFGLG EGAWTTALPS IPAGVPATVL MRRPDISAAQ
RAVFAAQSRV GVAKTAWFPS ISLTGAAGHA SPEVGDLFKW SMRSWGVGAL LSLPLFDGGR
REAGVQAAGA QLDAALAAYR QQALVAFQEV EDQLSSIRIL QEQSTVQGQA VVAAKRATSL
SDTRYRNGYV SQLDLLDARR SELRNRRQAL QVKSAQYQAA VGLIRALGGG WDVPADAPAG
ESANVPVAQA ALR
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