| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5127 |
|---|
| Symbol | |
|---|
| ID | 5750738 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 5681602 |
|---|
| End bp | 5683092 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641300251 |
|---|
| Product | N-acetylmuramoyl-L-alanine amidase |
|---|
| Protein accession | YP_001566141 |
|---|
| Protein GI | 160900559 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.498717 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.873024 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG CCAACTCCTC CTCCTATCCG TCCGGCCTGT CGCGCCGCAA TCTTTTGCAG
GCGGGCTCCA TCGTGCTGCT GCTGGGCCGC CAGCACATCG CGCACGGCGC CACCATCGTG
GCCGTGCGCG TCTGGCCCGC GCCCGAATAC ACGCGCGTGA CCATTGAGTC CGACCGGCCG
CTGGCTGCCA AGCAGTTCTT CGTGGACCAG CCCCCGCGGC TGGCCGTGGA CATCGAGGGC
ATCGACCTCA ATCCCGCGCT GCGTGAACTG GTGGCCAAGG TCCGCTCCGA CGATCCCAAC
ATCGCCTCCA TCCGCGTGGG CCAGAACTCG CCCAGCGTGG TGCGCCTGGT GATCGATCTC
AAGCAGCCCG CCAAGCCCCA GGTCTTCACG CTGCAGCCCG TGGCGGCCTA CAAGCACAGG
CTGGTGTTCG ACCTGTACCC CGCCAAGGCC GTGGACCCGC TGGAGGCGCT GATCAGCGAG
CGCCTGCGCG ATGCCTCCGG CGACGATACC GCTGTCGCAT CGGCACCGCC GCCTCCACCA
CCGCTGCCCC GGCCCTCAGG CCCCACGGCG CCAGCCCCCG ACCCGTTGGG GGACCTGATC
GCCCAGCACA GCAGCGGCTC CGGCGGCAAG ACGCCTGCAC CGCCCGCCGT GGTGGCACAG
GCACCTTCCC CTGCCGCTCC GGCCCCGGCG CCTCGCCCTG CCGCGCCTGC GCCCGTTCCG
GCGCCTGCCC CCATTGCCGC GCCCAACATC GCCACCTCGC GCCAGACCGA CCGCATCATC
ATCGTGGCGC TGGACCCCGG CCACGGCGGC GAGGACCCCG GCGCCACCGG CCCCAGCGGC
ACGCGCGAAA AGGACGTGGT GCTCAAGATC GCCCACCTGC TGCGCGACCG CATCAACGAC
ACCCGCATCG GCGGCAGCCC CATGCGCGCC TTCATGACGC GCGATGCCGA CTTCTTCGTG
CCCCTGGCCA CGCGCGTGGA AAAGGCCCGG CGCGTGCAGG CCGACCTGTT CATCAGCATC
CACGCCGACG CCTTCACCAC GCCGGCCGCG CGTGGTGCCA GCGTCTTTGC GCTCAGCGAC
AAGGGCGCCT CCAGCACGGC CGCGCGCTGG CTGGCCAACA AGGAAAACCA GTCCGACATC
GTCGGTGGCC TGAACATCGG TTCGCAGGAC CAGCATGTGC AGCGCATGCT GCTGGACATG
AGCACCACGG CCCAGATCAA GGACAGCCTC AAGCTCGGCG GCGCCCTGCT GGGCGAGATC
GGCAACATGG CCAAGCTGCA CAAGCCGCGC GTGGAGCAGG CCGGGTTTGC CGTGCTCAAG
GCGCCCGACA TTCCCAGCGT GCTGGTGGAA ACCGCCTTCA TCAGCAACCC CGAGGAAGAG
GCCCGGCTGC GCAGCAGCGC CTACCAGGTG CAACTGGCCG ACGCGCTGAT GCGCGGCATC
CGCAACTACT TCGCGCACAA CCCGCCGCTG GCACGCAGCC GCTCCGTCTG A
|
|---|
| Protein sequence | MSDANSSSYP SGLSRRNLLQ AGSIVLLLGR QHIAHGATIV AVRVWPAPEY TRVTIESDRP
LAAKQFFVDQ PPRLAVDIEG IDLNPALREL VAKVRSDDPN IASIRVGQNS PSVVRLVIDL
KQPAKPQVFT LQPVAAYKHR LVFDLYPAKA VDPLEALISE RLRDASGDDT AVASAPPPPP
PLPRPSGPTA PAPDPLGDLI AQHSSGSGGK TPAPPAVVAQ APSPAAPAPA PRPAAPAPVP
APAPIAAPNI ATSRQTDRII IVALDPGHGG EDPGATGPSG TREKDVVLKI AHLLRDRIND
TRIGGSPMRA FMTRDADFFV PLATRVEKAR RVQADLFISI HADAFTTPAA RGASVFALSD
KGASSTAARW LANKENQSDI VGGLNIGSQD QHVQRMLLDM STTAQIKDSL KLGGALLGEI
GNMAKLHKPR VEQAGFAVLK APDIPSVLVE TAFISNPEEE ARLRSSAYQV QLADALMRGI
RNYFAHNPPL ARSRSV
|
|---|
| |