| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5068 |
|---|
| Symbol | |
|---|
| ID | 5750679 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 5615252 |
|---|
| End bp | 5616376 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641300192 |
|---|
| Product | hemin-degrading family protein |
|---|
| Protein accession | YP_001566082 |
|---|
| Protein GI | 160900500 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3720] Putative heme degradation protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.16634 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGCG CCGTCCACGA TGCCGAGGAG GGCGGGCTCC TGATTCCCGT CGATGCTCCC
GCAGTCCGCC AGCGCTTTGC GCGGGCGCGC CAGGGTGGCC TGCGCGCCAA GGAGGCCGCC
GATTCCCTGG GCCTGCCGGA AGGCGCCGCC ATTGCCGCGC ATGCGGGCCA GCATGAGGGC
AGCCTCCAGG CCGTGCCGCT GCGCGCCGAA TGGCTGGCCA TCCTGAAGGG CTTGCAGGAC
TGCGGCCCCG TGATGGCGCT GACGCGCAAC GAGTCCACGG TCCACGAAAA GACCGGGGTC
TATCAGAAGC TTTCGGTCAA CGGCGGCGTG GGCCTTGCCC TGGGCCGCGA CATCGACCTG
CGAATATTCT TTGCCCAATG GCATGCCGGC TATGCCGTGA CCGAGCAGCC TGCCCAGGCC
GGCAGGCCGG CCATGCGCAG CCTGCAGTTC TTCAATGCGC AGGGCCGTGC CGTGCACAAG
GTCCATGCGC GCGAGTCCAC CGACCTGCAG GCATGGGAGG CGCTGGTGCA GCGTTTCGCC
GAGCCCAGCG CTGGTTACCT GTTCCGCCAT GCCCGCCCGC GTGCGCTGCC GCAGGCCGAC
GAGGCCATCG ACGTGCCCGG CCTGAGCACT GCCTGGGCCG CCATGCAGGA CACGCATGAA
TTCTTCGATC TGCTGCGCCG GTTTGGCGCC GAGCGCCAGC AGGCCTTCCG CCTGGTGCCC
GGCCACTGCG CGCGGCTGGC GCCCGAGTCC GTGGCCCAGT TGCTGGGCGA TGCGGCCGTG
GACGGCCTGC CCATCATGGT CTTCGTGGAC AGCGGCGGCT GCATCCAGAT CCACACCGGC
CCCGTGCACA ACATCCAGCC CATGGACACG CCCGGCGGCG CGCAATGGAT CAATGTGATG
GACCCGGATT TCAACCTGCA TCTGCGCTGC GATCTGATCG CCAGCGTCTG GGCCGTGCAA
AAGCCCACGG CCGATGGCGT GGTCACCTCG GTCGAGGCCT TCGATGCCCG GGGCGACCTG
ATGGCCATGT TCTTTGGCGA GCGCAAGCCG GGCCGGGCCG AGCTGCCCGG CTGGCGCGAA
CTGGTGGCAG GCCTGCCGCG CCTGGCAGCG CAGGCGCTGG CCTGA
|
|---|
| Protein sequence | MSSAVHDAEE GGLLIPVDAP AVRQRFARAR QGGLRAKEAA DSLGLPEGAA IAAHAGQHEG
SLQAVPLRAE WLAILKGLQD CGPVMALTRN ESTVHEKTGV YQKLSVNGGV GLALGRDIDL
RIFFAQWHAG YAVTEQPAQA GRPAMRSLQF FNAQGRAVHK VHARESTDLQ AWEALVQRFA
EPSAGYLFRH ARPRALPQAD EAIDVPGLST AWAAMQDTHE FFDLLRRFGA ERQQAFRLVP
GHCARLAPES VAQLLGDAAV DGLPIMVFVD SGGCIQIHTG PVHNIQPMDT PGGAQWINVM
DPDFNLHLRC DLIASVWAVQ KPTADGVVTS VEAFDARGDL MAMFFGERKP GRAELPGWRE
LVAGLPRLAA QALA
|
|---|
| |