Gene Daci_5007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5007 
Symbol 
ID5750618 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp5542857 
End bp5544089 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content67% 
IMG OID641300131 
ProductYVTN beta-propeller repeat-containing protein 
Protein accessionYP_001566021 
Protein GI160900439 
COG category[S] Function unknown 
COG ID[COG3391] Uncharacterized conserved protein 
TIGRFAM ID[TIGR02276] 40-residue YVTN family beta-propeller repeat 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCCAGA GCGTCCGAGG GGCTGATTGG CGCAGCTACA CTGCGCAGAT TCTCAGAAGG 
TGGTGCTTTG TGAAACGTCT TTCCGTCGGG CGCTTGAGCG CGGCTGTGGC TTTGGTTGTG
GGCGGCGGTG CGCTGGCCTG GCTGGCTGTG GCATCCCTGC CCGGATCCAA ATCGGCCCGC
GCGGCCTCGG CCACGTCTGC TGCCGTGCAG GCGCAAGCCG CATCGGCCCA GGCGGCCGCC
GTTCCTGCCG CGCCTTCCGT TCCCTCGGCT ACGGCAGCTC CCGCGGCCCC GGTCGCGCGT
GTCACGCCGC CACCGCAGAC CCAGGGCCCC ACGCCCATCT TTGTGCTCAA CTCGCTTGAT
GCCAACATCA GCATCGTGGA CCCGGTCACC TGGCAGGAGA CGGCACGCAT TCCCACGGGC
AAGGAGCCGC ATCACCTGTA CCTCACGCCG GACGAGAAAT CGCTGGTCGT GGCCAATGCG
CTGGGCGACA CCCTGACCCT GGTCGATCCG CGCACGGGCG AGGTGCAGCG CGTGATCCGC
GACATCATCG ACCCCTATCA CCTGCGCTTC AGCCCGGACA TGAAGTGGTT CGTCACGGCG
GCCAACCGCC TCAACCACAT CGACATCTAC CGCTGGGATG GCCAGAACCC GCAGCTGGTC
AAGCGCGTGC CCACGGGCAA GACGCCCAGC CATCTCTGGA TCGATGCCAA GAGCACGACC
ATCTATTCCA CCATGCAGGA CAGCGATGCC CTGGTGGCCA TCGACATCGC CACCCAGACC
ATCAAGGCCC GCGTGCCCAC CGGCCCCATG CCGGCCGATC TCTATGGCAG CCCGGACGGC
ACCAAGCTGT TCATCGGCCT GACCGGCAGC GATGGCGTGG AAGTGTTCGA CATCACCGGC
CCCGAGCCGC GCAGCGTGGC CCGCATCAAG ACAGCCGCTG GCGCCCACGC CATGCGCGCC
GCCGGCGACG GCCGCCACCT GTATGTGAGC AACCGCGTGG CCAACACCAT CAGCAAGATC
GACATGCAGA CCAACCAGGT CGTGGCCAAC TACCCGGCAC CGGGCGGCCC GGACTGCATG
GACGTCTCCG CCGACGGCCG CTACCTGCTG GTCAGCTCGC GCTGGGCGCG CAAGCTGTCG
GTGATCGACA CCGTGGAAAA GAAGGTGGTC CAGCAGGTCA AGGTCGGCAA GTCGCCGCAC
GGCGTGTGGA CGCTGGCCCA CGCGCAACGC TGA
 
Protein sequence
MPQSVRGADW RSYTAQILRR WCFVKRLSVG RLSAAVALVV GGGALAWLAV ASLPGSKSAR 
AASATSAAVQ AQAASAQAAA VPAAPSVPSA TAAPAAPVAR VTPPPQTQGP TPIFVLNSLD
ANISIVDPVT WQETARIPTG KEPHHLYLTP DEKSLVVANA LGDTLTLVDP RTGEVQRVIR
DIIDPYHLRF SPDMKWFVTA ANRLNHIDIY RWDGQNPQLV KRVPTGKTPS HLWIDAKSTT
IYSTMQDSDA LVAIDIATQT IKARVPTGPM PADLYGSPDG TKLFIGLTGS DGVEVFDITG
PEPRSVARIK TAAGAHAMRA AGDGRHLYVS NRVANTISKI DMQTNQVVAN YPAPGGPDCM
DVSADGRYLL VSSRWARKLS VIDTVEKKVV QQVKVGKSPH GVWTLAHAQR