| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4981 |
|---|
| Symbol | pdxA |
|---|
| ID | 5750592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 5514692 |
|---|
| End bp | 5515720 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641300105 |
|---|
| Product | 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| Protein accession | YP_001565995 |
|---|
| Protein GI | 160900413 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.557335 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCAT CCGAACTTCC CGTCGTCGCC CTGACCCTGG GCGATCCCGC CGGCATAGGC
GCCGAACTGA TCGCACGCCT GCTGGCGCGG CCCGAGGCCA TGCAAAAGGC CAACATCGTG
CTGGCCGGCG ACCCCTGGCT GTGGCAGCAG GGCCAGCGCA TCGCGGGCCT GCAGGTGGCC
ACCGCACCCA TCGCCAGCAT GGCCCATGCA CGGGGCCGCA CCGACACCGC CCTGCCCGCC
TTCCTGGCCC TGGACACGGT GGCCCCCGAT GCCGTGCACC AGGGCCGTGC CGAAGCCGCA
GGCGGGCGCT CGGTGCTGCA GGTGCTGGAC CTGTGCATGG ACGCGGCCCA GGCCGGCCAG
ATCGACGCCA TCTGCTTTGC GCCGCTCAAC AAGCAGGCCA TGAAGCTGGG CGGCCTGCGC
CATGAAGACG AGCTGCACCA CTTTGCCGAG TACCTGGGCG TCACCGGCTA TTTCTGCGAA
TTCAATACGC TGGGCGATCT GTGGACCTCG CGCATTTCGT CCCATGTGCC GCTCAGGGAC
GTGGCCGGCT ATCTGAGCCA GGAGCGCATC GCGCAGGCGG CCGAGCTGAT CTACCGCGCG
CTGCTGGCCA GCGGCATGGC AGCCCCCAAG GTGGCGGTGG CGGGCTTCAA CCCGCACAAC
GGCGATGGCG GCACCTGCGG GCGCGAGGAG ATCGACATCA TCGCGCCGGC CGTGCGCGCG
CTGCAGGCCC GCGACTGGCC CACGCCCGAT CCGTTCCACG GCCCCTTCCC GGCCGACACC
ATCTTCCTGA AGGCCCAGGC GGGCGAGTAC CAGGCCATCG TGACCATGTA CCACGACCAG
GGCCAGATCG CCATCAAGCT GCTGGGCTTC TCGCGCGGCG TGACTGTGCA GGGCGGCCTG
CCGATCCCGA TCACCACGCC GGCCCACGGC ACGGCCTATG ACATCGCGGG CCAGGGCCGG
GCCAGCGTGG AGGCCACCTG GCAGGCCTTC CTGATCGCCT GCCGCATGGG CGCCGCGCGC
CTGTCCTGA
|
|---|
| Protein sequence | MPASELPVVA LTLGDPAGIG AELIARLLAR PEAMQKANIV LAGDPWLWQQ GQRIAGLQVA
TAPIASMAHA RGRTDTALPA FLALDTVAPD AVHQGRAEAA GGRSVLQVLD LCMDAAQAGQ
IDAICFAPLN KQAMKLGGLR HEDELHHFAE YLGVTGYFCE FNTLGDLWTS RISSHVPLRD
VAGYLSQERI AQAAELIYRA LLASGMAAPK VAVAGFNPHN GDGGTCGREE IDIIAPAVRA
LQARDWPTPD PFHGPFPADT IFLKAQAGEY QAIVTMYHDQ GQIAIKLLGF SRGVTVQGGL
PIPITTPAHG TAYDIAGQGR ASVEATWQAF LIACRMGAAR LS
|
|---|
| |