Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_4922 |
Symbol | |
ID | 5750529 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 5440581 |
End bp | 5442434 |
Gene Length | 1854 bp |
Protein Length | 617 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641300042 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001565936 |
Protein GI | 160900354 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.051397 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGCGC CGACGATTGC GTACGACCCT GTACTCGAAC GTCCGTCTTC GATGATGGCG GCGTCCCTGC AACGCAGCCT GCGCGAGCAG CAGGCCCTGC TCGACAATGC CGGCGTCGGC ATCGTCTTCA TTCGCCAACG CGTCATCGTC CGCTGCAACC AGTGCTACGC AGACATCTTC GGCTACGCGG GCGAGCATGC GCTGGTGGGC ATCAACAGCG AACATCTGCA TCCCAGCCGC GATGAGCTGC GCAGCCTGGG ACGCGAGGCC TACCGCACGC TGAGCGCCGG CCTGTCCTTT CGCACGCAGC GCCGCCTGCG CCGCAAGGAC GGCAGCCTGT TCTGGGGAGA ACTCACGGGG CGGCTCATCA ATCCGGGCGA TGCGCGCGAG GGATCGATCT GGATCGTGAG CGATATCGAC GACCGCCTGC GTGCCCAGCA GGCCCTGAGC CAGGCCCACG AACTGCTGGA GCAGCAGGTG CGCGACCGCA CACGCGAACT CAGCGCCACG GTGGAGAACC TGCACCGGGA GATTGCCGAC CGCAAGCTGG ACCAGGAACG CATCTACTGG ATGGCGCACT ACGACGCGCT CACCGGCCTG CCCAACCGCA CGCTGCTGGC CGAGCGCAGT GCCCGCGCCA TCGAGCTGGC CAAGGCCAAC GACACGCCGC TGGCCGTGAT GTTCCTGGAC CTGGACCACT TCAAGCATGT CAATGATTCG CTGGGCCATC GCGTGGGCGA TGCCCTGCTG GTGGAGATTG CCCGCCGCCT GCGTGCCGTC GTGCGCGACC GCGATACGGT GGCCCGCATC GGCGGCGACG AATTCGTGCT GCTGCTGCCC GGTGCCAATG CCCAGGGTGC GGCCCGCGTG GCCGGCAAGC TGCAGGAGGC GTCGCGCCAG GCCTACCAGA TCGACCGCCA TGAGCTGACC ATTGCGCCGT CCATTGGCAT TGCGCTGTAC CCGCGCGACG GCCACGACAT CGACTCGCTG ACCCAGGCCG CCGACGCGGC CATGTACCAC GCCAAGCAGG CCGGCCGCAA CACCTACCGC TTCTTCACGC CGCAGATGCA GGCCCAGTCC CTGCGCGCCC TGCAGCTGGA GAACGCGCTG CGCCGGGCGC TGGAGCGCAA TCAGCTGTAT CTGCACTATC AGCCGCAGAT CACGCTGAGC ACGGGCCGCG TGCGCAGCGT GGAGGCGCTG CTGCGCTGGG AGCACCCGGA ACTGGGCTCG GTCTCACCGG CCGAGTTCAT TCCCGTGGCC GAGGACAGCG GCCAGATCCT GCAGATCGGC GAATGGGTGC TGCGCAGCGC CATGCAGCAG TTGCAGGTCT GGCGCAATGC GGGCCTGTGC GACCTGAAGG TGGCCGTGAA TCTTTCGGCC ATCCAGTTCC ATCAGCAGCA ACTGCCCGAG ATCATCAACC GCATCCTGCT CGACAGCGAC CTGCCGGCCG ATTCTCTGGA GCTGGAGCTG ACCGAGGGCG TGGCCATCCA TGATCCGCGC CAGGCGACAG CCACCATGGA CCGGTTGCGC GAGCACGGCG TGCGCCTGGC CATGGATGAC TTCGGCACCG GCTATTCATC CCTGAGCCAG CTCAAGCGCT TTCAGATCTA CAAGCTCAAG ATCGACCAGT CCTTCATCCA GGACCTGGAC CACGACAGCA ACGACCGCGC CATTGTCAGC GCCATCATCC GCATGGCCCA GGCCCTGGGC ATGCAGACCA CGGCCGAGGG CGTGGAGACC GAGGCACAGC TGGAGTTCCT GCGCGAGCAA GGCTGCGATG AGGCCCAGGG CTACCATTTC AGCCGCCCGC TGGCACCAGA GGCGTTGGAG TCCTTCTTGC GCAGCCAGGG CTGA
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Protein sequence | MSAPTIAYDP VLERPSSMMA ASLQRSLREQ QALLDNAGVG IVFIRQRVIV RCNQCYADIF GYAGEHALVG INSEHLHPSR DELRSLGREA YRTLSAGLSF RTQRRLRRKD GSLFWGELTG RLINPGDARE GSIWIVSDID DRLRAQQALS QAHELLEQQV RDRTRELSAT VENLHREIAD RKLDQERIYW MAHYDALTGL PNRTLLAERS ARAIELAKAN DTPLAVMFLD LDHFKHVNDS LGHRVGDALL VEIARRLRAV VRDRDTVARI GGDEFVLLLP GANAQGAARV AGKLQEASRQ AYQIDRHELT IAPSIGIALY PRDGHDIDSL TQAADAAMYH AKQAGRNTYR FFTPQMQAQS LRALQLENAL RRALERNQLY LHYQPQITLS TGRVRSVEAL LRWEHPELGS VSPAEFIPVA EDSGQILQIG EWVLRSAMQQ LQVWRNAGLC DLKVAVNLSA IQFHQQQLPE IINRILLDSD LPADSLELEL TEGVAIHDPR QATATMDRLR EHGVRLAMDD FGTGYSSLSQ LKRFQIYKLK IDQSFIQDLD HDSNDRAIVS AIIRMAQALG MQTTAEGVET EAQLEFLREQ GCDEAQGYHF SRPLAPEALE SFLRSQG
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