| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4724 |
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| Symbol | rpsA |
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| ID | 5750316 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 5178334 |
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| End bp | 5180019 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641299829 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_001565738 |
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| Protein GI | 160900156 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.271218 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGAAT CTTTTGCCTC CCTGTTTGAA GAATCGCTGC AACGCACGGA AATGCGTCCT
GGCGAGGTCA TCACCGCTGA AGTCGTGCGC GTCGAGCACA ACTTCGTCGT CGTGAACGCT
GGCCTGAAGT CGGAAGCCTA CGTGCCAATC GACGAATTCA AGAACGACCA GGGAGAAATC
GAAGTCCAGG TGGGCGACTT TGTGTCGGTC GCCATCGGCT CGATCGAAAA CGGCTACGGC
GACACCATCC TGTCGCGCGA CACCGCCAAG CGCCTGGCCT CGTGGCTGGC CCTGGAAAAG
GCCCTGGAAT CGGGCGAATT CGTGACCGGC ACGACCTCCG GCAAGGTCAA GGGCGGCCTG
ACGGTGCTGG TCAACGGCAT CCGCGCCTTC CTGCCCGGTT CGCTGATCGA CACCCGTCCG
ATCAAGGACC TGACTCCGTA CGAAAACAAG ACGATGGAGT TCAAGGTCAT CAAGCTGGAC
CGCAAGCGCA ACAACGTGGT GCTGAGCCGC CGCGCCGTGG TCGAAGCCTC GATGGGCGAA
GAGCGCGCCA AGCTGATGGA AACGCTGAAG GAAGGCGCCA TCGTTCAAGG CGTGGTCAAG
AACATCACCG AATACGGTGC GTTCGTGGAC CTGGGCGGCA TCGACGGCCT GCTGCACATC
ACCGACATGG CATGGCGCCG CGTGCGTCAT CCCTCGGAAG TCGTGCAGGC TGGCCAGGAA
ATCACCGCCA AGATCCTCAA GTTCGACACC GAGAAGAACC GTGTCTCGCT GGGTCTGAAG
CAAATGGGCG ACGACCCGTG GATGGGCGTT TCGCGCCGCT ACCCCTCGAG CACCCGCCTG
TTCGGCAAGG TCACGAACAT TGCCGACTAC GGCGCGTTCG TCGAGCTGGA ACCCGGCATC
GAAGGCCTGG TGCACGTCTC CGAAATGGAC TGGACCAACA AGAACATTGC TCCGACCAAG
CTCGTTACCC TGGGTGACGA AGTCGAAGTC ATGGTGCTGG AGATCGACGA AGACAAGCGT
CGCATCTCGC TGGGCATGAA GCAGTGCAAG GCCAACCCCT GGCAAGAGTT CGCGCAGAAC
ACCAAGCGCG GCGACCGCGT CAAGGGCCCG ATCAAGTCGA TCACCGACTT CGGCGTGTTC
GTGGGTCTGG CTGCCGGTAT CGACGGCCTG GTGCACCTGT CCGACCTGTC CTGGAACGAG
CCCGGCGAAG CCGCCGTGCG CAACTACAAG AAGGGCCAGG AAGTCGAAGC CATCGTGCTG
GCCGTGGACG TCGAGCGCGA GCGCATCTCC CTGGGCATCA AGCAGCTGGA CAGCGATCCC
TTCACGACCT TCGTGACCGT GAACGACAAG GGCCAGATCG TGTCGGGCAA GGTCAAGACG
GTGGACGCAC GTGGTGCTGA AATCGACCTG GGCGAAGACA TCATCGGTTA CCTGCGTGCT
TCGGAAATCG CCGTGGACCG CGTGGAAGAT GCCCGCTCGG TGCTGAAGGA AGGCGACGAG
ATCACCGCCG TGGTGGTCAA TGTGGATCGC AAGACCCGCA ACATCCAGCT GTCGATCAAG
GCCAAGGACC AGGTCGACCA GCAAGAAGCC ATGGCTTCCC TGTCCGCTCA GTCGGCCAAG
GAAAACGCCG GCACGACCAG CCTGGGCGCC CTGCTGCGCG CCAAGCTGGA CAACTCCGAC
AAGTAA
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| Protein sequence | MSESFASLFE ESLQRTEMRP GEVITAEVVR VEHNFVVVNA GLKSEAYVPI DEFKNDQGEI
EVQVGDFVSV AIGSIENGYG DTILSRDTAK RLASWLALEK ALESGEFVTG TTSGKVKGGL
TVLVNGIRAF LPGSLIDTRP IKDLTPYENK TMEFKVIKLD RKRNNVVLSR RAVVEASMGE
ERAKLMETLK EGAIVQGVVK NITEYGAFVD LGGIDGLLHI TDMAWRRVRH PSEVVQAGQE
ITAKILKFDT EKNRVSLGLK QMGDDPWMGV SRRYPSSTRL FGKVTNIADY GAFVELEPGI
EGLVHVSEMD WTNKNIAPTK LVTLGDEVEV MVLEIDEDKR RISLGMKQCK ANPWQEFAQN
TKRGDRVKGP IKSITDFGVF VGLAAGIDGL VHLSDLSWNE PGEAAVRNYK KGQEVEAIVL
AVDVERERIS LGIKQLDSDP FTTFVTVNDK GQIVSGKVKT VDARGAEIDL GEDIIGYLRA
SEIAVDRVED ARSVLKEGDE ITAVVVNVDR KTRNIQLSIK AKDQVDQQEA MASLSAQSAK
ENAGTTSLGA LLRAKLDNSD K
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