| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4629 |
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| Symbol | rumA |
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| ID | 5750219 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 5087410 |
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| End bp | 5088882 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641299732 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001565643 |
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| Protein GI | 160900061 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0000000503319 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAGTGAAC CCCGCGACAA CAAGATCCCC GACAACCTGC CCGAAGCCGA CATCGACGCC
CCTGCACTGC CCGAAGGCTG GCTGCAGGTG TTGTCCATGG ATATGGACGC CCAGGGCGTG
GCCCGCAAGA GCGATGGCAA GGTGGTATTC ATCGACGGCG CCCTGCCTAC CGAACTGGTC
AGCGCCAACA CCCATCGCAA GAAAAACAAC TGGGAAGCCG CCAGCCTGAC GGCCATCCAC
CGCGAATCTT CCCAGCGCGT GCGCCCCGGC TGCCCGAATT TCGGTCTGCA CGCCGGTGCC
TGCGGCGGCT GCAAGATGCA GCATCTGCAC GTGGGCGCCC AGGTGGCCAT CAAGCAGCGC
GTGCTGGAAG ACAATCTCTG GCATCTGGCC AAGGTCAAGC CCGAGACGCT GCTGCGCCCC
ATCGAAGGTC CGTCCTGGGC CTACCGTTTC CGCTCGCGCC TTTCGGTGCG CTATGTGGCC
AAGAAGGGCA AGGTGCTGGT GGGCTTTCAC GAGCGCAAGA GCCGCTACAT CGCCGACATG
GAGACCTGCA AGATCCTGCC GCCCCATGTG GACGCCATGC TGCTGCCCAT GCGCGCGCTG
ATCGCCTCCA TGGATGCGCG CGAAACCTGC CCGCAGATCG AGGTTGCCTG CGGCGATTCC
GTCACGGCCC TGGTGCTGCG CCATCTGGAG CCGCTGTCCG AGAACGACCA GGCCCGTCTG
CGCGCTTTCG CAGTCGAGCA CAACGTGCAG TGGTGGCTGC AGCCCAAGGG CCCGGACACC
GTGCACCTCA TGGAGCAGGG AGGCGCCCAG CTCGACTACG GCCTGCCCGA TTTCGGCATC
ACCATGCCGT TCAAGCCCAC GGACTTCACC CAGGTCAATC CGCACATCAA CCGCGTGCTG
GTCACGCGCG CGCTGCGCCT GCTGGATGTC AAGAAGGACG AGCGCGTGAT CGACTGGTTC
TGCGGTCTGG GCAACTTCAC CCTTCCCCTG GCCACGCAGG CGCGCGAGGT GCTGGGCATC
GAGGGCAGCG ATACCCTGGT CAAGCGCTCC CATGAAAACT ACGCGGCCAA CAACGCACAG
CGCGCAGAGG GCGACAAGCT CGCGCCCACG CGCTTTGTGG CGCGCAACCT GTTCGAGATG
ACGCCCGAGA TGCTGTTCGC CGACGGCGTG GCCGGCAAGT GGCTGGTCGA TCCGCCGCGC
GAAGGCGCGT TTGCGCTGTC CAAGGCCCTG GCCGACATCC ACCAGGCGCG CATCGGTGCC
GAAGGCGCCG AGCCCCTGCC GGCAGGGCAT GAGGCCTGGC GCTTTCCCGA GCGCATCGTC
TATGTCAGCT GCAATCCCGC CACGCTGGCG CGCGATGCCG GCCTTCTGGT GCATCTGGCC
GGCTATCGCT GTGTGTCGGC AGGCGTGGTC AACATGTTCC CCCACACGGC CCACGTGGAG
AGCATGGCGG TGTTCGAGCG CTGCGCAGAC TGA
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| Protein sequence | MSEPRDNKIP DNLPEADIDA PALPEGWLQV LSMDMDAQGV ARKSDGKVVF IDGALPTELV
SANTHRKKNN WEAASLTAIH RESSQRVRPG CPNFGLHAGA CGGCKMQHLH VGAQVAIKQR
VLEDNLWHLA KVKPETLLRP IEGPSWAYRF RSRLSVRYVA KKGKVLVGFH ERKSRYIADM
ETCKILPPHV DAMLLPMRAL IASMDARETC PQIEVACGDS VTALVLRHLE PLSENDQARL
RAFAVEHNVQ WWLQPKGPDT VHLMEQGGAQ LDYGLPDFGI TMPFKPTDFT QVNPHINRVL
VTRALRLLDV KKDERVIDWF CGLGNFTLPL ATQAREVLGI EGSDTLVKRS HENYAANNAQ
RAEGDKLAPT RFVARNLFEM TPEMLFADGV AGKWLVDPPR EGAFALSKAL ADIHQARIGA
EGAEPLPAGH EAWRFPERIV YVSCNPATLA RDAGLLVHLA GYRCVSAGVV NMFPHTAHVE
SMAVFERCAD
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