Gene Daci_4568 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_4568 
Symbol 
ID5750156 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp5025663 
End bp5026868 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content71% 
IMG OID641299669 
Productmajor facilitator transporter 
Protein accessionYP_001565582 
Protein GI160900000 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.368636 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACCAG AACAACACAC TCCAGCGCTG CAGCGCCGCA ACCTCGGCCT GCTCGTGGCC 
GCGCAATCGC TGGGGGGCGC GTCGCCGCCC ATCATCATTT CGCTGGGCGG CCTGGTCGGC
CAGCAGCTGT CCACCAATCC CACGGCCACC ACGCTGCCGG TCAGCATCTA CCAGCTGGGC
CTGGCGCTGT CCACGCTGCC CGCGGCCTGG CTGATGCAGC GCATGGGGCG GCGCACGGCC
TATGTGCTGG GAGCCATCCT GGGCGTGGTC TCGGGCGTGA TCGCGGCCCA GGGCATTGCG
CAATCGGACT TCGTGACCTT CTGCATCGGC ACGGCGCTGG CGGGCTTTTA CGCGGCCTGC
GTGCAGAGCT ACCGCTTTGC GGCCACCGAC GCCATGACCG ACCCCGCCGA GCAGGCGCGC
GCCATCTCGC GCGTGATGAT CGGCGGGCTG ATCGCGGCCA TCATCGGCCC GCAGGTGGTG
ATCTGGACGC GCGACGCCCT GCCCATGACG CCGTTCGCCG GCAGCTTCTA CAGCCAGGCC
GTGCTCGCCC TGCTGGCCCT GCCGTTGCTG CTGGGCCTGA AGCTGCCGCC GCCCCAGGCC
CGCGCCGTGG CGGGCGAGGC CCGGCCGCTG GCCGAGATTG CGCGCACGCC GCAGTTCATC
GTGGCGGCTT CGGCCGGCGT GGTCAGCTAC GGTCTCATGG CCTTTCTGAT GACGGCCGCG
CCCATGGCCA TGGTGGGCTG CGGCCACACG GTGGGCGAGG CGGCGCTGGG CATCCAGTGG
CATGTGCTGG CCATGTTCGC GCCCAGCTTC TTCACGGGCC GGCTGATCGC GCGCTTTGGC
AAGCGCCGCA TCACGGCGCT GGGGCTGGTG ATGATCGCGG CCTCGGCCCT GATGGCGCTG
ATGGGGCTGG AGCTGCTGCA CTTCTGGGGC TCCCTGGTGC TGCTGGGCGT GGGCTGGAAC
TTCGGCTTCA TCGGCGCCAC GGCCATGGTG ACCGAGTGCT ACCGCCCTGC CGAGCGCGCC
AAGGTGCAGG CCCTCAATGA CTTCCTGGTC TTCGGCACCG TGGCCGTGGC CTCGTTCGGC
TCGGGCCAGC TGCTGCACAC GGCCGGCTGG GACGGCATCA ACACCTGGCT GCTGCCCATC
GTGGGCGTGG TGCTGCTGAT GCTGGCCGTG CAGGGACGGG GTCGCGGCGC GGGCGCGCCG
GCCTGA
 
Protein sequence
MTPEQHTPAL QRRNLGLLVA AQSLGGASPP IIISLGGLVG QQLSTNPTAT TLPVSIYQLG 
LALSTLPAAW LMQRMGRRTA YVLGAILGVV SGVIAAQGIA QSDFVTFCIG TALAGFYAAC
VQSYRFAATD AMTDPAEQAR AISRVMIGGL IAAIIGPQVV IWTRDALPMT PFAGSFYSQA
VLALLALPLL LGLKLPPPQA RAVAGEARPL AEIARTPQFI VAASAGVVSY GLMAFLMTAA
PMAMVGCGHT VGEAALGIQW HVLAMFAPSF FTGRLIARFG KRRITALGLV MIAASALMAL
MGLELLHFWG SLVLLGVGWN FGFIGATAMV TECYRPAERA KVQALNDFLV FGTVAVASFG
SGQLLHTAGW DGINTWLLPI VGVVLLMLAV QGRGRGAGAP A