| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4564 |
|---|
| Symbol | |
|---|
| ID | 5750152 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 5020983 |
|---|
| End bp | 5022614 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641299665 |
|---|
| Product | gamma-glutamyltransferase |
|---|
| Protein accession | YP_001565578 |
|---|
| Protein GI | 160899996 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0405] Gamma-glutamyltransferase |
|---|
| TIGRFAM ID | [TIGR00066] gamma-glutamyltranspeptidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00323876 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGCAT CTTCCTCTCC CTTCACTCCC GGCAACCCCT ACGACTCCAG GCGGGTGCCC
GTGTTCGCGC GCAATGCCGT GTCCACTTCC CACCCGCTGG CGGCGCAGGC CGGCCTGCGC
ATGCTGTGGG CAGGCGGCAA CGCGGTGGAC GCGGCCATTG CGGCGGCGGC GGCCATGACC
ATCGTCGAGC CGGTGAGCAA CGGCCTGGGC TCGGACGCCT TCTGCATCCT CTGGGATGGC
AAGGAGCTGC ACGGGCTCAA CGCCAGCGGC CGCGCACCGC AGGGCTGGGC GCCCGAGTAC
TTCCACCAGC GCTACGGCCG CCAGGACAAG CCGCCGCGCC GGGGCGTGGA CTCCATCACG
GTGCCGGGCG CCGTCAGCGC CTGGGTGGCC CTGAACGAGC GCTTCGGCAA GCTGCCCTTT
GACGCGCTGA TGGAGCCGGC CGCCGAGATC GCCGAGCGCG GCTACCTGGT TCCGCCCGTG
GTCCAGCAGA AATGGGCCGC AGGCGCGCCC GAGCTGCAAT CGCAGCCGGG GTTCAGGGAA
AGCTTCCTGC CCCGGGGCCG CGCGCCGGAA GTGGGCGAGC TGTTTTGCTT TCCCGCTGCA
GCGCGCGCCC TGCGCGCCAT TGGTGCCACG CGCGGCAAGG CCTTTTATGA AGGCGAGATT
GCACGGGCCG TGACCTCATT CGTGCAGCAG CACGGCGGCT GCCTGGGCAT GGCCGACATG
GCCGCGCACG AGGTGCAATG GGTGCAGCCG CTGGCCAAGG ACTACCGCGG CCACACGCTG
CACGAGATCC CGCCGGGCGG GCAAGGCATT GCCGCGCAGA TTGCGCTGGG CATTCTGTCC
AATTTCGACC TGGCCAGCCT GCCGGTGGAT GGCGTGGCCT CCCAGCATCT GCAGATCGAG
GCCATGAAGC TGGCCTTTGC CGACATCTAC CGCTACGTGG CCGACGCGGA CATGGAGGTG
ACGCCCGCGC AGATGCTCGA CGACGCCTAC CTGGCCTCGC GCGCCAGGCT GATCGATCCG
CGCCGTGCGC AGGACTTCAA GGCCGGCAAC CCCGTGCGCG GCGGCACCAT CTACCTGACG
GCAGCCGACG AGAACGGCAT GATGGTCAGC TTCATCCAGA GCAACTTCTC GGGCTTTGGC
TCGGGCGTGG TGGAGCCGAC CTTCGGCATC AGCCTGCAAA ACCGCGGCCA CGGCTTCGGC
ACGGACCCCC AGCATCCCAA CCGCGCCAAC CTGGTGGGCC CGGGCAAGCG CCCCTTCCAC
ACCATCATTC CGGCCTTCCT GACCCGCGAC GGCCAGCCCG TGATGAGCTT CGGCGTCATG
GGCGGCAACA TGCAGCCCCA GGGCCACATG CAGACTGTGG TGCGCATGCT GGACTACCGC
CAGTCGCCCC AGGCGGCCTG CGATGCGCCG CGCTGGCGCG TCAACGAAGG CTTGGCCATC
AACGTGGAAG GCGGCATGGA CCCGACCACC ATCGCCGGCC TGCAGGCGCT GGGCCACCAG
GTGGAGGTCA TCCACGACCC CTACCAGGAC TTCGGCGCCG GCCAGTTCAT CTGGCGCATG
GGCGATCCCG CCGTGGAGGG CTACCAGATC GCCAGCGACC CGCGCCGCGA CGGGCTGGCG
GCCGGGTACT AG
|
|---|
| Protein sequence | MHASSSPFTP GNPYDSRRVP VFARNAVSTS HPLAAQAGLR MLWAGGNAVD AAIAAAAAMT
IVEPVSNGLG SDAFCILWDG KELHGLNASG RAPQGWAPEY FHQRYGRQDK PPRRGVDSIT
VPGAVSAWVA LNERFGKLPF DALMEPAAEI AERGYLVPPV VQQKWAAGAP ELQSQPGFRE
SFLPRGRAPE VGELFCFPAA ARALRAIGAT RGKAFYEGEI ARAVTSFVQQ HGGCLGMADM
AAHEVQWVQP LAKDYRGHTL HEIPPGGQGI AAQIALGILS NFDLASLPVD GVASQHLQIE
AMKLAFADIY RYVADADMEV TPAQMLDDAY LASRARLIDP RRAQDFKAGN PVRGGTIYLT
AADENGMMVS FIQSNFSGFG SGVVEPTFGI SLQNRGHGFG TDPQHPNRAN LVGPGKRPFH
TIIPAFLTRD GQPVMSFGVM GGNMQPQGHM QTVVRMLDYR QSPQAACDAP RWRVNEGLAI
NVEGGMDPTT IAGLQALGHQ VEVIHDPYQD FGAGQFIWRM GDPAVEGYQI ASDPRRDGLA
AGY
|
|---|
| |