| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4553 |
|---|
| Symbol | |
|---|
| ID | 5750141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 5008532 |
|---|
| End bp | 5009275 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641299654 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001565567 |
|---|
| Protein GI | 160899985 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.221841 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTTT CCTCCCAGCT GCTGTCCACC CTCGCGCCGC TTGGCCGCAT CCGCGCATCC
ATCAACACCG GCAATCCCAT CCTTGCGCGG CTGCAGGCCG ATGGCCAGCC CGCAGGCGTG
TCCATCGACC TGGCCCGGCG CCTTGCGCAG CAGCTGGGGC TGGAGCTGGA ACTGGTGGTC
TTCGATACGG CCGCCAAGTC GGTGGATGCC GTCACGCGCG AGGAGGCCGA CTTCGGCTTC
TTTGCCGTGG ACCCCGTGCG CGGCGCGGGC ATCGGCTTCA CGGCGCCCTA TGTGCTGATC
GAGGGCAGCT ACCTGGTGCG CCAGGATTCG CCGCTGACCG ACAACGCCCA GGTGGACCGG
GCCGGGCACA CCGTGGTGGT CGGCAAGGGC AGCGCCTATG ACCTGTACCT GAGCCGCGAG
CTCAAGCATG CGCAGATAGA GCGCGCCGTG TCCTCGCCCG CCGTGGTGCA GACCTTTGTG
GAATCGACGG CCGACGTGGC CGCCGGCGTC AAGCAGCAAT TGGAGGCTGA TGCCGCCCGC
CTGCCCGGCC TGCGCCTGCT GCCGGGCCGC TTCATGGTGA TCCAGCAGGC CATGGGCCTG
CCCAAGGGGC GGGGCGATGA GGCCCTGCGC GTGCTGGCGG CCTTTGTGGA GGAGGCCAAG
GCTTGCGGCT TTGTGGCCGA GGCGCTGCAG CGCCATGGCA TTCAGGGCGC GGCCGTCGCA
CCGCTGGCGG GCGCATCGGC ATGA
|
|---|
| Protein sequence | MNLSSQLLST LAPLGRIRAS INTGNPILAR LQADGQPAGV SIDLARRLAQ QLGLELELVV
FDTAAKSVDA VTREEADFGF FAVDPVRGAG IGFTAPYVLI EGSYLVRQDS PLTDNAQVDR
AGHTVVVGKG SAYDLYLSRE LKHAQIERAV SSPAVVQTFV ESTADVAAGV KQQLEADAAR
LPGLRLLPGR FMVIQQAMGL PKGRGDEALR VLAAFVEEAK ACGFVAEALQ RHGIQGAAVA
PLAGASA
|
|---|
| |