| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4539 |
|---|
| Symbol | |
|---|
| ID | 5750127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 4992143 |
|---|
| End bp | 4993291 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641299640 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001565553 |
|---|
| Protein GI | 160899971 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.516976 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAA CCCCTTCCCC GCTGACCCTG GCGGCCGCCG CCGTGCTGGG CCTGGCCGGC
TCCGGCGCCA GCTTCGGCGC CTTCGCGCAA GGCACCTCCA GCGTCACGCT CTACGGCATC
GTCGATGTGG GCGTGGAGCA CGTGAACAAC GTGGCGGCGG GCGGCGGTCT CAGCCGCATG
CCATCGACCA CCAGCCTGGT GCCCTCGCGC TGGGGCCTGC GCGGCAGCGA GGACCTGGGC
GGCGGCCTCA AGGCCATCTA CACGCTGGAG TCGGGCTTTG CGCCCGACCA GGGCACCTTC
AACCAGGGCG GGCGCGGCTT TGGGCGCCAA AGCTGGGTGG GACTGGGCGG CAACTGGGGC
AGCCTGACCA TGGGCCGCCA GAACTCCATG CTGTTCTGGT CACTGCTGGA CTCGGACATC
ATCGGCCCGG CCGTCTTCGC CATGGGCTCG CTCGATGCCT ACATCCCCAA CTCGCGCGCC
GACAACATGC TGGCCTGGCG CGGCAACTTC GGCGGCCTGG CACTGGGCGC GGGCTACAGC
TTCGGGCGCG ATGCCGTCAA CGCAGGCCCC AGCCCCGCGG GCACCAACTG CCCGGGCGAG
AGCGGATCGG ACACGCAGGC CTGCCGCCAG TGGTCGCTGT ACGCCAAGTA CGACACGCCC
GTCTGGGGCC TGGCGCTGGG CTACGAGCAG CAAAATGGCC GCACGCCGGC CTCGTCCACC
GACCCGGTGT TCGGCGGCAT GACCTCCAGC GCCAAGCATG ACGAGCGCCT GCACCTGGGC
GGCTACTTCA AGCTGGCCGG CGTGAAGGTC GGCGGCGGCC TGCTGCGCCG CGACAACGAT
GGCGACGCCG TCAAGCCGCG CAGCAACCTC TGGTACGTGG GCGCCTCGTA CCCGGTCACC
GAGGCGCTGG TGCTCGAAAC CCAGTGGCTG ACGCTGCGCT ACCGCGGCGT CTCGGGCTAC
GACTCCGACC TGCTGGTGGC ACGCGCCATC TACAACCTGT CCAAGCGCAC GGCGGTCTAC
ACCCAGCTCG GCCACATCCG CAACGACCGC CTGGCCACCG TCTCGGTCAG CGGCGGCGCC
CCGGGCAGCA ACACCGCGCC CGGCCGCTCG CAGACCGGCA TCAACGTCGG CATCCGCCAC
ATGTTCTGA
|
|---|
| Protein sequence | MQKTPSPLTL AAAAVLGLAG SGASFGAFAQ GTSSVTLYGI VDVGVEHVNN VAAGGGLSRM
PSTTSLVPSR WGLRGSEDLG GGLKAIYTLE SGFAPDQGTF NQGGRGFGRQ SWVGLGGNWG
SLTMGRQNSM LFWSLLDSDI IGPAVFAMGS LDAYIPNSRA DNMLAWRGNF GGLALGAGYS
FGRDAVNAGP SPAGTNCPGE SGSDTQACRQ WSLYAKYDTP VWGLALGYEQ QNGRTPASST
DPVFGGMTSS AKHDERLHLG GYFKLAGVKV GGGLLRRDND GDAVKPRSNL WYVGASYPVT
EALVLETQWL TLRYRGVSGY DSDLLVARAI YNLSKRTAVY TQLGHIRNDR LATVSVSGGA
PGSNTAPGRS QTGINVGIRH MF
|
|---|
| |