| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4483 |
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| Symbol | |
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| ID | 5750071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 4904968 |
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| End bp | 4907304 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641299584 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001565497 |
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| Protein GI | 160899915 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACGCC GAGTCACCAT ACACACGCCA TTGGGCGAGC AGCTGCATTT CCGTGAATTG
CGCGGCCAGG AAAACATCAG CCAACTCTTC AGCCTCGATG TGGAAATGCT CAGCGAAAGC
GAAAGCATCG ATCCCAAGGC CCTATTGGGT AAAAACGCCA CCATAGAAAT AGAAACCCAG
GGCGGCGGCA GGCGCTTCAT CGACGGCATC GTCACCCGCT TTGGCATGCA GGGCCAGGAC
CACCGCCACT ACGCCTACAA GGCCCGCCTG AGCCCCTGGC TGTGGCTGGC CACGCGCAAG
AGCGACTTTC GCATCTTCCA GAACCAGACC GTGCCCGACA TCATCGAGCA GGTATTGGGC
GTCTATGGCC ATCCCCTGCA AAAGAAACTC ACGCGCGCCT ATCGCAGCTG GGACTACTGC
GTTCAATACA ACGAAAGCGA TTGCGACTTT GTCTCGCGAT TGATGGAGCA CGAAGGCATT
TACTACTTCT TCGAGCATGC CTCGGGCCAG CACACCCTGG TGCTGTGCGA CGACATCATT
GCCTCGCACA GCGTATTGCC CGGGGGCGCC TCCATTCCCT TTTATCCCCC GGAAAAAGCC
GCTGCAGGCG ATCAGGAAAA CATCCACGCC TGGCAGCTGG AGCAGGAAAT CAAACCAGGC
CGCCATTACA GCGACGACTA CGACTTCAAG AAGCCCCGGG CCGACCTCAC CCACCTGCGG
CGCGACCCGC CGGGCCACGC CCATGACGGC CATGAAATCT ACGAATGGCC GGGCGGCTAC
ACCCAGCTGA GCGACGGCGA GGACTACATC CGCGTGCGCC TGAAGGAAAG CCTCACGGGC
CAAAGCCGGG TGCGGGGCCA GTCCTGCCAC CGGGCGCTGG CCACGGGCTA CACCTTCAGC
CTCTACAACT ACCCGCGCGG CGACCAGAAC CAGCAGTACC TGATCACGGG CCTGAGCTAC
CACTTGAAGG AGAACCCCCG CGTCAGTGCC GTGGCCCCGG GCGCCAAGGG CAGCGCCGCG
GAAGACGGCT CCTTCCAGCG CTACGAGTTG CAGGCCCAGC CCACGAGTCT TGCCTACACG
CCCGCGCGCA CCACGCCCAA GCCGCGCACC ACGGGCCCGC AGACCGCCGT CGTCGTGGGC
CCGGCCGGAG AAGAAATCTG GACCGACGAA TACGGCCGCA TCAAGGTGCA GTTCCACTGG
GACCGCCTGG GCGCCATGAA CGAGAACTCC AGCTGCTGGA TCCGCGTGGC CACGAACTGG
GCAGGCCCGG GGTTCGGGGC CATCTCCATT CCCCGCATAG GGCATGAAGT CGTCGTCGAC
TTCCTCAATG GCGACCCGGA CTACCCGCTG GTCACGGGCT GCGTCTACAA CGCGGCCAAC
ATGCCGCCCT GGGCGCTGCC GGCCAACGCC ACGCAATCGG GCATCAAGAC AAGATCGAGC
AAGGGCGGTG CCGCAGGCGC GGGCCTGAAG AACGGCCCGG GCGACGCCAA CGCCATCCGC
TTCGAGGACA AGGCGGGCGC CGAACAGCTG TGGCTGCACG CGCAAAAGGA CCAGCTCACC
GAAGTCGAGA ACGACGAGGA CAAATGGGTG GGCAACGACC GGCGCAAGAC CATCGACCGC
GACGAGACCA ACATCATCCA CCGGGACCGC ACCGAGACCG TGGACCGCGA CGAGACCATC
ACCGTGCACA ACAACCGCAC GGAGCGAGTG GACCACAACG AGAAGATCAG CATTGGCGAC
AACCGCAACG AGGATGTCGG CATCGACGAG AACATCTCCA TCGGCAAGAA CCGCAGCAAG
ACCGTTGGCA AGACCGAGAC CGACAAGATA GGCCAGAACT GGCACGTCAC GGTGGGCCTG
CTCAAGACCC AGACCATAGG CATGGCCTAC ATGCAGAACG TGGGTGTGAT GAAGATGATG
AACATCGGCG TCAACTACAT GGAGAACATC GGCGTGGCCA TGCAGACCAC GGTCGGCATG
AGCCAGAACC TCACTGTGGG GCAGGAGCGC CAGGTCAAGG TCGGCAGCAA GCAAAGCACG
GAAGTGGGCT CGCAGTACTC GCTGACCGTG GGCGGTGGTG GTGGCGCGGG AGGCGGAGGC
GGAGCCGGTG GCGGCATGGC CATGAACATC ACGTCGCCCG GCAGCGGTGG GGGCGGTGGA
GGCGGAGGTG GCAAGGCCTC CCAGCTCACC ATGGATGGGC AAAGCATTGA GCTCAACGCC
GCCAAGATCC GGCTCGAAGC CCAGCAGGAA ATCCTGCTGA CCTGCGGCAA AAGCACCATC
CGCATCACGC CCGGCGACAT CCAGATTCTC TCGCCCACGG ACCGGCTCAA CTGCTGA
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| Protein sequence | MTRRVTIHTP LGEQLHFREL RGQENISQLF SLDVEMLSES ESIDPKALLG KNATIEIETQ
GGGRRFIDGI VTRFGMQGQD HRHYAYKARL SPWLWLATRK SDFRIFQNQT VPDIIEQVLG
VYGHPLQKKL TRAYRSWDYC VQYNESDCDF VSRLMEHEGI YYFFEHASGQ HTLVLCDDII
ASHSVLPGGA SIPFYPPEKA AAGDQENIHA WQLEQEIKPG RHYSDDYDFK KPRADLTHLR
RDPPGHAHDG HEIYEWPGGY TQLSDGEDYI RVRLKESLTG QSRVRGQSCH RALATGYTFS
LYNYPRGDQN QQYLITGLSY HLKENPRVSA VAPGAKGSAA EDGSFQRYEL QAQPTSLAYT
PARTTPKPRT TGPQTAVVVG PAGEEIWTDE YGRIKVQFHW DRLGAMNENS SCWIRVATNW
AGPGFGAISI PRIGHEVVVD FLNGDPDYPL VTGCVYNAAN MPPWALPANA TQSGIKTRSS
KGGAAGAGLK NGPGDANAIR FEDKAGAEQL WLHAQKDQLT EVENDEDKWV GNDRRKTIDR
DETNIIHRDR TETVDRDETI TVHNNRTERV DHNEKISIGD NRNEDVGIDE NISIGKNRSK
TVGKTETDKI GQNWHVTVGL LKTQTIGMAY MQNVGVMKMM NIGVNYMENI GVAMQTTVGM
SQNLTVGQER QVKVGSKQST EVGSQYSLTV GGGGGAGGGG GAGGGMAMNI TSPGSGGGGG
GGGGKASQLT MDGQSIELNA AKIRLEAQQE ILLTCGKSTI RITPGDIQIL SPTDRLNC
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