| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4439 |
|---|
| Symbol | |
|---|
| ID | 5750027 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 4860992 |
|---|
| End bp | 4861762 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641299541 |
|---|
| Product | IclR family transcriptional regulator |
|---|
| Protein accession | YP_001565454 |
|---|
| Protein GI | 160899872 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1414] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR02431] beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.325495 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.819621 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAC CTTCCACCCT CGCCCAGCGC GACTGGATTG CCGGACTGGA ACGCGGCGTA
TCGATCATCG AAGCCTTTGA CGACGCCCAC CCGCGCATGA CGGCCGCCGA GGCCGGCCAG
CGCACGGGCA TGACGCGCAC CGCTGCGCGG CGCTACCTGC TGACGCTGCA GCACATGGGC
TACGTGGCGG GGGACGGCAA GCTGTTCTGG CTCACGCCGC GCGTGCTGCG GCTGGGGCAG
TCGTACCTGG AGTCGGCGCG GCTGCCGCGC ATCGTCCAGC CGTTCCTGCA GCGCGTGGCG
GCCGGCACCC ATGAAACCGC CTACCTGGCG GTGCTGGACG ACGACGAGGT GGTCTATATC
GCGCGCAACG GCCCCAACCG CAACATGAAC ACCGGCTATG TGCTGGGCGC ACGCGTGCCG
GCCCAGGTCA CGGCGGCCGG CATGCTGATG CTGTCCATGC GCAGCGACGC CGAGCTGGAG
CACTGGCTGG ACAACCGCGC GCTGACGGTC TTCACCTCGC ACACCATCAC CTGCCCCGCC
GAAATGCGCC GCGAGCTGGC CCTGATCCGC ACCCAGGACT GGGCGCTGTG CGAGCAGCAG
CTCAACCTGG ACTCGCGCGG CATTGCCGTG CCGCTGCGCG ACCGCCACGG CGCGCTGGCA
GGCGCCCTCA ACATCACCAT GCCCATGGGC CGCGAGACCG GCAAGGACGC CGTGGCGCGC
GTGCTGCCCA TGCTGCGCGA GACGGCGCAG GCGATGCGGG ATCTGATCTG A
|
|---|
| Protein sequence | MTTPSTLAQR DWIAGLERGV SIIEAFDDAH PRMTAAEAGQ RTGMTRTAAR RYLLTLQHMG
YVAGDGKLFW LTPRVLRLGQ SYLESARLPR IVQPFLQRVA AGTHETAYLA VLDDDEVVYI
ARNGPNRNMN TGYVLGARVP AQVTAAGMLM LSMRSDAELE HWLDNRALTV FTSHTITCPA
EMRRELALIR TQDWALCEQQ LNLDSRGIAV PLRDRHGALA GALNITMPMG RETGKDAVAR
VLPMLRETAQ AMRDLI
|
|---|
| |