Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_4426 |
Symbol | |
ID | 5750014 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 4846995 |
End bp | 4848665 |
Gene Length | 1671 bp |
Protein Length | 556 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641299528 |
Product | extracellular solute-binding protein |
Protein accession | YP_001565441 |
Protein GI | 160899859 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.169116 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.480332 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCAAA GACGCTTCCT GCCTCGCCTT TCCCTGCTGC GCACCCACTT GCGCACCCTG CGAATTTCCG CACTGCTTCC CGCCCTGGCC GCAGCCCTGC TGTGCGCACC GCCCGCCCAG GCCGAAACCC TGCGCTGGGC GCGCTCCACC GACGCATCCA CGCTGGACCC GCATGCGCTG AACAACGGCC CCAACCACAA CCTGCTGCAT CAGATCTACG AGCCGCTGAT CATCCGCACG GCCGATGGCA AGCTGCTGCC CACCCTGGCC ACGTCCTGGG CGCTGACTGC CGACCCCTCG GTCTGGGAGT TCAAGCTGCG CAAGGGCGTG AAGTTCCATG ACGGCAGCCT GTTCACGGCC GACGACGTGC TGTTCTCGCT GCGCCGCGCG CGCTCGGCCA CCTCGGACAT GCGCTCGCTG CTGACCTCGA TCACCGACGT GACCAAGGTC GATGCCTTCA CCGTGCACAT CAGGACCAAC GGACCCAACC CGCTGCTGCC GGCCAGCCTC ATCAACATCC AGATCTTGAG CGCCGCCTGG GCCAAGGCCC ATGGTGCCGA GCAGCCGCAG AACGCGCTGG CCAAGGAAGA GAACTACGCC ACGCGCAACG CCAACGGCAC GGGGCCCTAC GTCATCGCCT CGCGCGAGCA GGACACGCGC ACCGTGCTGC GGCAGTTTCC CGGCTACTGG GGCAAGGGGC TGTTCCCGCT GGAAATCGAC GAACTGGTCT ACCTGCCCAT CAAGTCCCAG GCCACGCGCG TGGCGGCGCT GCTGTCGGGC GAGGTGGACT TCGTGCAGGA CCTGCCCATC CAGGACATTG CGCGCCTGAG CGCCGACCCG CGCTTTCGCA TCAACCAGGC CGCCGAGAAC CGCACCATCT TCCTGGGTCT GAACGTGGGC GCCGCCCCGC TGTCGCATTC CGATGTGAAG GACAAGAACC CCCTGGCCGA CCTGCGCGTG CGCCAGGCCT TCCAGCTGGC CATCGACCGG CAGGCCATAC AGCGCGCCGT GATGCGCGGC CTGTCCGTGC CCACCAACAT CATTGCGCCG CCCTTTGTGC ACGGCTACGA GAAATCCTTT GGCGCCGTGG GCAAGGCCGA CCTTGTCCAG GCCAGGAAGC TGCTGGCCGA GGCCGGCTAT CCCAACGGCT TCGGCATCAC CCTGCATTGC ACGAACGACC GTTATCTGAA CGACGAGGCC ATCTGCCAGG CCATCGCCGG CTTTCTGGGC CGCATCGGCG TGAAGACCGC CGTGTCGTCG CGGCCGCTGG CCATCCAGAC GGCGGCCATC AACAACCAGG AGACGGATTT CTACCTCTAC GGCTGGGGCG TGCCCACCTA TGACTCGGCC TATGTCTTCG ACTACCTGGT GCACACGCGC GGCAAGAACG GCCGGGGCAA CACCAATGCC ACGCGCTACA GCAATGCCGA GCTGGACAGC CAGATCGTCT CCCTGGCCTC CGAGGGCGAT GCGCGCAAGC GCGATGCCAC CATCCACTCC ATCTGGAGCA CGGTGCAAAA GGAGCTGATC TACCTGCCGC TGCACGACCA GATCCAGACC TATGCCATGG TGCGCAAGTT CGACATCCCG GTGAATCCGT CGAACACGCC TTACTTCAAG CTGTTCAAGC AGCCCGGTGC GCGCCAGGCT GCGGTGGCCG GCGCGCAGTA G
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Protein sequence | MTQRRFLPRL SLLRTHLRTL RISALLPALA AALLCAPPAQ AETLRWARST DASTLDPHAL NNGPNHNLLH QIYEPLIIRT ADGKLLPTLA TSWALTADPS VWEFKLRKGV KFHDGSLFTA DDVLFSLRRA RSATSDMRSL LTSITDVTKV DAFTVHIRTN GPNPLLPASL INIQILSAAW AKAHGAEQPQ NALAKEENYA TRNANGTGPY VIASREQDTR TVLRQFPGYW GKGLFPLEID ELVYLPIKSQ ATRVAALLSG EVDFVQDLPI QDIARLSADP RFRINQAAEN RTIFLGLNVG AAPLSHSDVK DKNPLADLRV RQAFQLAIDR QAIQRAVMRG LSVPTNIIAP PFVHGYEKSF GAVGKADLVQ ARKLLAEAGY PNGFGITLHC TNDRYLNDEA ICQAIAGFLG RIGVKTAVSS RPLAIQTAAI NNQETDFYLY GWGVPTYDSA YVFDYLVHTR GKNGRGNTNA TRYSNAELDS QIVSLASEGD ARKRDATIHS IWSTVQKELI YLPLHDQIQT YAMVRKFDIP VNPSNTPYFK LFKQPGARQA AVAGAQ
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