| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4396 |
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| Symbol | |
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| ID | 5749984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 4813022 |
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| End bp | 4814806 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641299499 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_001565412 |
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| Protein GI | 160899830 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain
[COG2203] FOG: GAF domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.898588 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTACCC GTTGGACTAC CGAATCCGAG AAAGAGCAAC TGCTCGGACT GCAGACCGCT
GAAATCCTGG ACCTGAATGC CAGAAAGGAA TTTCAGCGCA TCACCGAGCT CACCAGCCGC
ATGTTCATGG CTCCAATTGC CATCATCACG GTTCTGGACG AGCACAGGCA ATGGTTCAAG
GCACCTGTGG GTGTGGATAT GGATGGCAGC CTGCGCACGG ATGCCTTCTG TGACCACACC
ATCAGAAACG AAGGAATCAT GGTGATTCCC GATACGCACC TGGACAGCAG ATTTTCAGAA
AATCCCCTGG TCACCCATAA GCCCAATATC AGGTTCTATG CAGGTGTGCC TTTGATCATG
GAATCCGGTC ACGCCATCGG CAGCCTGTGC ATCATCGATA CCCGGCCCAG GACATTCTCC
GAAGAGCAAG GCCAGCAACT GCAAGCCATG GCCGCCATCG TTCAGGCTCA ACTCCAATAC
CATCACAGAA TTGGAAAAAC AAACGAAGTC ACGGGCCTGC CAAATCGCAC GCAACTCAAG
CTGGACCTGA AGAGCCTTTG CATTCTGGCC CCGGGAGCGG CACGCGGCCT GGTATTGATG
GAGGTGCTCA ACCACGCCAG CCTGCTGGAA ATGAGCAATG CGCTGGGCTT GAGCTATGTC
GAGCAGCTCA TGCGCGACAT TGCCAAGGCG GTCACGGACA TGACGGGGAC GCACGCTACC
GTCTACCACG TGGGCCTGGC CAGGTTTGCC TGGGTGATCA GCGCAGGCAG GCAAGAAGAT
GAGGAGGCAT TGGTCAACCA ATTGCTGGAA TACCTGCAAA AACCCATCAC CAGCGCCGAT
CTGCGGTTCG AACTTCAACC CAGGGCAGGC GTGGTGCGGT TCTACCTGAA CCAGCACGAG
GTGGACGATG TCATCCGCAA CGCGATGGTG TGCGTGCAGC AGGCCGGATA CAACGCACGA
TCATTTCACC GCTATGAGGA GAATGAGGAC AGTCTCCAGC AAAGGTCCTA TCGGCTCCTG
CGGGACTTCG GACATGCGCT GGGCAATGGG CAGCTGCGGC TGGTGTACCA GCCCAAATTC
GACAACCACA GTTTCAGCTG CAAGGGGCTG GAGGCCCTCA TACGCTGGAA GCATCCTCAA
ATGGGAGAAA TCCCGCCCAG CGAATTCATC CCCCTGGTTG AAGCCACGCC GTTGATCCAC
AGCCTGACAC GGTTCGTGAT CAAAACGGCG CTGGCGCAGG TGGCGGCCTG GAAAGCCGAG
AAACTCGATC TTCAGGTCTC CATCAACATC TCCCCGCGCA ATCTGGATGA GGTCGATTTT
CCGGACTACC TGAACGCCAT GTGCAACCAG CACGGCGTTC CGCTGAAAAA CATCGTGATC
GAGTGCACAG AAAGCGATGT GCTGACAGGC CAGGGCACGG TTCAGGCGCT TCAAGACATC
AGAAAACTCG GCATAAAGGT TGCACTGGAT GATTTTGGCG CCGCATATTC CAATCTTGCA
TCACTCAAGA ATCTGCCTGC CGAGATATTG AAGATAGACC GGTCCATGGT CTGCGACATC
GATACCAATG ACCGGGCCCT GTCCGTATTG AAATCCATCA TGACCATGGC CTCGGATCTT
GGCTATCGCC TGGTGGCAGA GGGCGTTGAC AGCGCCGAAG TCTTTGATTT ACTGGTTTCC
CTGGGTTTCG ATGAAATACA GGGCTACTAT TTCAGCAGGC CCATTGAAGC GTCGGAAATC
AGGAAATTCG TTGAAGAGCG CAACCGGTAC GCCAACGGAA AATAG
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| Protein sequence | MLTRWTTESE KEQLLGLQTA EILDLNARKE FQRITELTSR MFMAPIAIIT VLDEHRQWFK
APVGVDMDGS LRTDAFCDHT IRNEGIMVIP DTHLDSRFSE NPLVTHKPNI RFYAGVPLIM
ESGHAIGSLC IIDTRPRTFS EEQGQQLQAM AAIVQAQLQY HHRIGKTNEV TGLPNRTQLK
LDLKSLCILA PGAARGLVLM EVLNHASLLE MSNALGLSYV EQLMRDIAKA VTDMTGTHAT
VYHVGLARFA WVISAGRQED EEALVNQLLE YLQKPITSAD LRFELQPRAG VVRFYLNQHE
VDDVIRNAMV CVQQAGYNAR SFHRYEENED SLQQRSYRLL RDFGHALGNG QLRLVYQPKF
DNHSFSCKGL EALIRWKHPQ MGEIPPSEFI PLVEATPLIH SLTRFVIKTA LAQVAAWKAE
KLDLQVSINI SPRNLDEVDF PDYLNAMCNQ HGVPLKNIVI ECTESDVLTG QGTVQALQDI
RKLGIKVALD DFGAAYSNLA SLKNLPAEIL KIDRSMVCDI DTNDRALSVL KSIMTMASDL
GYRLVAEGVD SAEVFDLLVS LGFDEIQGYY FSRPIEASEI RKFVEERNRY ANGK
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