| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4389 |
|---|
| Symbol | |
|---|
| ID | 5749977 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 4805261 |
|---|
| End bp | 4806061 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641299492 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_001565405 |
|---|
| Protein GI | 160899823 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.223267 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGTT CTCTGGAAGA CATTCTGTTT GGCGCGCCCA GCCCGCAGGC CAGGAAGATC
ACGCAGGCGG TCAGCCTGAT CGCCGCGGCC GGGCTGATTG CGCTGGCTGC GGGCGTCGTG
TGGCGTTTTC ATTCCGCAGG CCAGCTCGAG GCCCGGTTCT GGGAATTCTT CGCCTGGCCC
ACCACCTGGG CCTTTCTGGC CAAGGGCCTG CTCGGCACGC TGGCATCCTC GGCCATGGCC
GCCGTCATTG CGCTGAGCCT CGGGCTGGTG CTGCTGGCGG GGCGCCTGGC ACGGCCCCGC
ATCGTGCGCT GGCCCAGCAT CGCCGTCATC GAATTCCTGC GCGGCACGCC CACGCTGCTG
CTCATCTACG TGTGCTTTCT GGTGCTTCCC GCAGCCGGCA TCAAGCTCGG CACGTACTGG
ATGCTGACCC TGCCCATAGG CCTGAGCACT GCCGCCGTGG TGGCCGAGGT CTACCGCGCA
GGCGTGCTGG CCGTCCCTCG CGGCCAGACC GATGCCGCGC GAAGCCTGGG GCTGACCGAG
GTCCAGGTCT TCCGGTTCGT CGTCTTCCCG CAAGCCCTGC GCTACATCGT CCCGGCCCTG
GTCGCGCAGC TGGTCATCGT GGTCAAGGAC ACCACCTTCG GCTACATCGT CACCTACGGC
GAGCTCATGC AGAACGCCAA GGTACTCATC GCCAACTACC ACGCGTTGGT GCCCGTGTAC
CTGGTGGTGG CGGTGCTGTA CTGCCTGGTG AACTACGCGA TATCGAGGGC GAGCAGGCGG
CTGAACCGGC CGGTGCACTG A
|
|---|
| Protein sequence | MSRSLEDILF GAPSPQARKI TQAVSLIAAA GLIALAAGVV WRFHSAGQLE ARFWEFFAWP
TTWAFLAKGL LGTLASSAMA AVIALSLGLV LLAGRLARPR IVRWPSIAVI EFLRGTPTLL
LIYVCFLVLP AAGIKLGTYW MLTLPIGLST AAVVAEVYRA GVLAVPRGQT DAARSLGLTE
VQVFRFVVFP QALRYIVPAL VAQLVIVVKD TTFGYIVTYG ELMQNAKVLI ANYHALVPVY
LVVAVLYCLV NYAISRASRR LNRPVH
|
|---|
| |