| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4387 |
|---|
| Symbol | |
|---|
| ID | 5749975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 4803642 |
|---|
| End bp | 4804598 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641299490 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001565403 |
|---|
| Protein GI | 160899821 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.974956 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCCCTGG CAGCCATCCC CAGATTTACA TCACAGACCA AGCAGGAAGA CCACATGCCC
ATCAAATCCA TTCTGAAATC CACCGTGGTG ACGCTGGCGA TCGTGGGCAG TGGATCGCTT
TTTGCGCAGG GCGCACCCCT GAACACAGCG GCGTTTGACG CCCTGGTGGC GCAAGGCCCC
GTGGCCGACG CCGCGACCAT CGCATCGAGC ACCTGGGCCA GCAAGATCAA GCAGACCGGC
ACGCTGCGCC TGGGCAGCAC CCAGACCTCG AATCTGTTCT CCCTGCTCAA CGAGAAGGAC
GGCAAGATCC GCGGCTTCGA CGCAGGCCTG GCCCAGCTGC TCACGCGCTA CATCCTGGGC
GATGCGTCCA AGTACCAGTT CGCACAGGTG ACCTCGTCCA CGCGCGAGCA GGTGCTCATC
AACAACCAGG CGGACATGGT GATCGCCACC TACTCCATCA CCCCCGCACG TGCCGAGAAG
ATCTCGTTTG CCGGCCCCTA CTACACCTCG CAGGCCGGGG TGCTGGTCAA GGCAAGCAAC
AAGACCGTGC AGTCCTACAG CGACCTGGCA GGCAAGAAGG TGGCCACGCA GGCCGGCTCC
ACGGGCCCCG CCATCCTGGC GCAGCACGCG CCCAAGGCGG TCGTGCAGGA GTTCCAGACC
CACCAGGAGG CGCTGGACTC CCTGCGCCAA GGCCGTGTGG ATGCCTATGT GACCGACTAC
ACCCTGCTGC TCAACACCCT GAGCCTGGGC ACCGGCGACG CGCGGCTGGC AGGCGCGCCC
TTTGGCGCCC AGGATTCCTA CGGCATCGGC CTGCCCAAGG GCTCGGACGG CGTGGCCTTC
ATCAACGCCT TCCTGAAGAA AATCGAAGCC GATGGCACCT GGGCCAAGCT CTGGACCATC
TCCATCGGAC AGCGCACCGG CAGCACGGCC GTTCCCACGC CGCCCGCCCT GCCCTGA
|
|---|
| Protein sequence | MPLAAIPRFT SQTKQEDHMP IKSILKSTVV TLAIVGSGSL FAQGAPLNTA AFDALVAQGP
VADAATIASS TWASKIKQTG TLRLGSTQTS NLFSLLNEKD GKIRGFDAGL AQLLTRYILG
DASKYQFAQV TSSTREQVLI NNQADMVIAT YSITPARAEK ISFAGPYYTS QAGVLVKASN
KTVQSYSDLA GKKVATQAGS TGPAILAQHA PKAVVQEFQT HQEALDSLRQ GRVDAYVTDY
TLLLNTLSLG TGDARLAGAP FGAQDSYGIG LPKGSDGVAF INAFLKKIEA DGTWAKLWTI
SIGQRTGSTA VPTPPALP
|
|---|
| |