| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4348 |
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| Symbol | |
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| ID | 5749936 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 4760996 |
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| End bp | 4762558 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641299451 |
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| Product | RNA polymerase, sigma 54 subunit, RpoN |
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| Protein accession | YP_001565364 |
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| Protein GI | 160899782 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0382133 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTTCCA TGCACCTCAG GGCGGACATA CGCCAGTCCC AGACGCTTTC TCCCCGCCTG
CAGCTTGCGG TGCGGATGCT GCAGATGTCC TCGCTGGACT TTGCCGCCGT GGTGCGCAGC
AAGCTGGAGG ACAACCCGTT CCTGGAAGAC CCGCAGGATG CGCAGTACGG CGAGTACGAA
CAGGGGCTGC TCGACGGCAA GGAGCTGGGT GAAGAGGGCC GGGAAGGCGG CATGGGCAGG
CTGGCCCCGG AGGCAGGCCT GGCCCCGGAC ACCGGCATGG ATGACGGCAT CGGCATGGGC
ATCGGTATGG ACATGGACCG CGACCTCCCC GGCATGCAGC ACCCGCCCGA CCCGGCCGAC
CACCTGCCCG GCCCCGCCAC CGAACCCGCC GACGACCGCG ACCTGTGGCT GGCCGACATG
CATACGGGCG CGCGCCAGGG GGTGGATGGA GAAGGCACGG CCATGGATCT GGCCGCCTGC
GAGACCACGC TGGCCATGCA CCTGCACGGC CAGCTCAATG TGATGGCGAT GACGCCACGC
GACCTGTGCA TGGCCCGGGC CATCGTGGAG TCGCTGGACG ACGACGGCTA TCTGCGCACC
GACCTGCAGG AGCTGGCCGG CCTGCTGGCC CTCAGCCCCG CACCTGACGC GCAGGAAATG
CTCATTGCCC TGCGCCTGGT GCAATCGCTG GACCCGGCCG GCGTGGCCGC CCGCAGCGTG
GGCGAATGCC TGTTGCTGCA ATGCCCGCAG ATCGGCGATG CCCGCCTGCG CCAGCTGGCC
CAGGCCATGG TGCAGGACCA CATGGATGCG CTGGCCGCCC GCGACGTGCC CCGGCTGGCC
CGGGCGCTGC AGGTGCCGCC CGCGCAGATC ACGCAGGCGC TGGACTGCAT ACGTCGGCTG
AACCCCAGGC CGGGCTGGAA CTTCGGCTCC TCCCACGTGG ACTACATCGT TCCCGACGTG
ATCGTGCGCC GGGGCCAGAA CGGCTGGAAC GTGCACCTCA ACCCCGCGGT CGTGCCGCGC
GTGCGCCTGA ACCGCGTCTA CGAGCAACTG TTTCAGCGCC ACCGCCGCAG CGGCCAGAAC
CAACTGGCCG ACCACCTGCA GGATGCGCGC TGGACGGTGC GCAACGTGGA GCAGCGCTTT
TCCACCATCC TCGACGTGGC GCAGGCCATC GTGCGCAAGC AGCAGCTGTT CCTGGAGTTC
GGCGCCATGG CCATGAAGCC GCTGGTGCTG CGCGAGATTG CCGAGGAAGT GGGCGTGCAC
GAGTCCACCG TCTCGCGCGT GACCAACAAC AAATACATGG CCACGCCCAC GGGCGTTTTC
GAGCTCAAGC ATTTCTTCTC GCGCCCCATG CTCAGCGCCA GCGGCAATGC CTGCTCGGCC
ACGGCCATCC GCGAGCTGAT CGGCGACATC ATCGCGGCCG AGTCCGATGC CCGGCCGCTG
TCGGATGTCG AAATCGCACG CCAGCTGAGT GCCCAGGGCC TGGTCGTGGC GCGCCGCACC
GTCACCAAAT ACCGCCAGCT GCTGCGCATA GAACCGGCCG ACCGGCGCAG GCGCCACGCC
TGA
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| Protein sequence | MGSMHLRADI RQSQTLSPRL QLAVRMLQMS SLDFAAVVRS KLEDNPFLED PQDAQYGEYE
QGLLDGKELG EEGREGGMGR LAPEAGLAPD TGMDDGIGMG IGMDMDRDLP GMQHPPDPAD
HLPGPATEPA DDRDLWLADM HTGARQGVDG EGTAMDLAAC ETTLAMHLHG QLNVMAMTPR
DLCMARAIVE SLDDDGYLRT DLQELAGLLA LSPAPDAQEM LIALRLVQSL DPAGVAARSV
GECLLLQCPQ IGDARLRQLA QAMVQDHMDA LAARDVPRLA RALQVPPAQI TQALDCIRRL
NPRPGWNFGS SHVDYIVPDV IVRRGQNGWN VHLNPAVVPR VRLNRVYEQL FQRHRRSGQN
QLADHLQDAR WTVRNVEQRF STILDVAQAI VRKQQLFLEF GAMAMKPLVL REIAEEVGVH
ESTVSRVTNN KYMATPTGVF ELKHFFSRPM LSASGNACSA TAIRELIGDI IAAESDARPL
SDVEIARQLS AQGLVVARRT VTKYRQLLRI EPADRRRRHA
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