| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4342 |
|---|
| Symbol | |
|---|
| ID | 5749930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 4752769 |
|---|
| End bp | 4754856 |
|---|
| Gene Length | 2088 bp |
|---|
| Protein Length | 695 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641299445 |
|---|
| Product | catalase |
|---|
| Protein accession | YP_001565358 |
|---|
| Protein GI | 160899776 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0753] Catalase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.631099 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0151111 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTAAGA AATCCCCTGG TGAAAAGAAA TCGTCCAAGC AATCCCCCAC GGGCCATGGC
GGAGAATTAC AGCAACAGGC CGACGGACAG CACCCCGGAT TGACCACGCA GCAAGGAATT
CCGGTTCCTG ACAATCAGAA CTCTCTCACC GCCTGGGAAA AAGGCCCTAC GCTGCTGGAA
GATTTCATCC TGCGCGAGAA AATCACGCAT TTCGACCATG AGCGCATTCC AGAGCGAATC
GTCCATGCAC GCGGCACAGG CGCCCACGGT TATTTCCAGC TGACAGATTC GCTGGAGGAG
TACACCACCG CCAAGGTCCT GACCGAAACC GGCAAGCAAG TGCCGATCTT TGTGCGCTTC
TCCACCGTGG CCGGTGGAGC AGGCTCGGTG GACACCCCGC GCGATGTGCG CGGCTTTGCC
ATCAAGTTCT ATACCGAAGA GGGCAACTGG GACCTGGTGG GCAACAACAT ACCGGTCTTC
TTCATCCAGG ACGCCATGAA ATTCCCCGAC CTGGTCCATG CCGTGAAGAT GGAACCCGAC
CGGGGCTTTC CGCAGGCCGC CACGGCGCAC GACACGTTCT GGGACTTCAT CTCCCTCATG
CCCGAGTCCA TGCACATGGT CATGTGGATC ATGAGCGACC GCACCATTGC ACGCAGCCTG
CGCATGATCG AGGGCTTTGG CGTGCACAGC TTCCGGCTGG TCAATGCCCA GGGTGAAAGC
ACCTTCGTGA AGTTTCACTG GCGGCCCGAA CTGGGCATCC AGTCCACGGT CTGGGACGAG
GCCCTCAAGC TGCAGGCCGC AGACAACGAC TACCACCGTC GCGACCTGTT CGAGGCCATC
GAGGCGGGCG ACTACCCGGC CTGGGAGCTG TGCGTGCAGC TGTTCTCGCA GGAGCAGGCA
GACGCCCTGC CCTACGACCA CCTGGACCCC ACCAAGCTCA TCCCCGAAGA GGAAATTCCG
CTGCGCAAGA TAGGCCGCTT CGTGCTGGAC CGCTGGCCCG ACAACTTCTT CGCCGAGACC
GAGCAGGTGG CCTTCTGCCC GGCCAATATC CCGCCCGGCA TCGATTTCAG CAACGACCCG
CTGCTGCAGG GCCGCCTGTT CTCGTACCTG GACACCCAGC TGTCGCGCCT GGGCGGGCCC
AACTTCACGC AGCTGCCCAT CAACGCGCCC AAATGCCCGT TCGCCCACCA CCAGCGCGAC
GGCCACATGC AGACCGAGGT GCCCAAGGGC CGCGTGGCCT ACGAGCCCTC CAGCCTGCAG
GCCGACAGCC CGCGCGCCTC GGCAGCCCGC GGCTTGCGGC ACTTTGCGCA GCCCGCGCAG
GAGGGCGCCA AGGGCCGCAT CCGCCCCGAG AGCTTTGCCG ACCACTACAG CCAGGCGCGC
ATGTTCTACC AAAGCCAGAG CGCGCAGGAG CAGGCCCACA TCGCCAGCGC CCTGGTGTTC
GAGCTGTCCA AGGTACAGAC GCCGCATGTG CGCCTGGCCG TGGTCGGCCA CCTGCAGGTG
ATAGACGCCG ACCTGGCAAA GCGCGTGGCC GACGGCCTGG GCCTGCCCCA GTTGCCGCCT
GCCGCCAAGC CTGCCGTGCC CCCGCAAAAG CTGCCGCCCA GCCCGGCCAC GCGCATCATC
GACCGCATGA AGCCCACCTT GCAGGGCCGC TGCGTTGCCA TCCTGGTGGA CGAAGGCTCC
AGCGCCCGGC ACGTTGCCGC CTTCCACCAG GCGCTGGTGG CGCAAAAGGC CAGCGTGAAG
ATCATTGCGC CCAAGATCGG CGGCGCCACG CTGGACGACG GCAGCCACCT GCCCGCCGAC
GGCCAGCTGG CCGGATCGCC GTCCGCGCAG TTCGATGCCG TGGTGTCCAT CATCACGCTG
GAGCGCGGCC AGGCGCTGGC CCATGAGGCA GCCGCGCAGG ACTGGTTCCG CGACGCCTTC
GGCCACCTCA AGGCCATTGC CGCCTGCAAG GCCACGCAGC ACATCATGAA GACGGCCGGC
ATCACGCCGG ACGAGGGCGT GTTCCCCATC GACAAGCCCG AACCCTTCAT CGAAGGCGCC
AAAAAGCGCT TCTGGGCCCG CGAAGCGAAG CTGAGAACGC TGGCCTGA
|
|---|
| Protein sequence | MAKKSPGEKK SSKQSPTGHG GELQQQADGQ HPGLTTQQGI PVPDNQNSLT AWEKGPTLLE
DFILREKITH FDHERIPERI VHARGTGAHG YFQLTDSLEE YTTAKVLTET GKQVPIFVRF
STVAGGAGSV DTPRDVRGFA IKFYTEEGNW DLVGNNIPVF FIQDAMKFPD LVHAVKMEPD
RGFPQAATAH DTFWDFISLM PESMHMVMWI MSDRTIARSL RMIEGFGVHS FRLVNAQGES
TFVKFHWRPE LGIQSTVWDE ALKLQAADND YHRRDLFEAI EAGDYPAWEL CVQLFSQEQA
DALPYDHLDP TKLIPEEEIP LRKIGRFVLD RWPDNFFAET EQVAFCPANI PPGIDFSNDP
LLQGRLFSYL DTQLSRLGGP NFTQLPINAP KCPFAHHQRD GHMQTEVPKG RVAYEPSSLQ
ADSPRASAAR GLRHFAQPAQ EGAKGRIRPE SFADHYSQAR MFYQSQSAQE QAHIASALVF
ELSKVQTPHV RLAVVGHLQV IDADLAKRVA DGLGLPQLPP AAKPAVPPQK LPPSPATRII
DRMKPTLQGR CVAILVDEGS SARHVAAFHQ ALVAQKASVK IIAPKIGGAT LDDGSHLPAD
GQLAGSPSAQ FDAVVSIITL ERGQALAHEA AAQDWFRDAF GHLKAIAACK ATQHIMKTAG
ITPDEGVFPI DKPEPFIEGA KKRFWAREAK LRTLA
|
|---|
| |