| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4339 |
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| Symbol | ligD |
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| ID | 5749927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 4748560 |
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| End bp | 4751175 |
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| Gene Length | 2616 bp |
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| Protein Length | 871 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641299442 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001565355 |
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| Protein GI | 160899773 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0275716 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGCCA CGCGCAGCAA GTTCCAGGCA TCCCGCCAGG CCCGCCCCAC CAATGGGGCG
GCCAAGGCGG CGACACCCCA GGCCTCGCTC GCGCTGTACC GGCAAAAGCG CGACTTCACG
CGCACACCGG AACCTTCGGC AGAACCTTCC AGTGAGACGA TTGCAGGGCA GCCCGGCGCG
GGCGCCCTGC AATTTGTCAT TCAAAAGCAC TGGGCCAGCC ACCTGCACTA CGACTTTCGG
CTGGAGCTGG ACGGCAGCAT GAAAAGCTGG GCCGTGCCCA AGGGCCCCAG CTACGACCCG
GCCGACAAGC GCATGGCCGT CCAGGTGGAA GACCACCCCA TGGCCTACAA CCGTTTCGAG
GGCCAGATTC CACCGGGACA GTACGGCGCG GGCAAGGTCA TCATCTGGGA CTGTGGCACC
TGGCTGCCCG AGGGCGATGC GGCCGAAGGC TATCGCAAGG GCAAGCTCAA GTTCGAACTG
CGCGGCCACA AGCTGCAGGG CCGCTGGACC CTGGTGCGCA TGCGCGGCAA GGACGACGCC
AAAAAGCCCG CCTGGCTGCT GATCAAGGAG CACGACGGCC TGGAACGTGC TGCCAGCGAA
TTCAACGTGG TCGAGGACAT GCCCGACAGC GTGGCCGGCC TTCCCCTGCC CACCGCTACA
GCGCCCGTCA CCACGCCCGT CGCTACGCCC GTCACCGCGC CCATGCCGCA GAGCATCGCC
CCGCAGCTGG CAACCTTGGT GGACCATGCA CCTGCAGATG CCGGGCAATG GATCTTTGAG
AGCAAGTTCG ACGGCTACCG GCTGCTGGCG CGCATCGAGG ACGGCGCCGT TCGCCTTTTC
ACACGCAACG GCAAGGACTG GACCACCAAA ATGCCCGCCC TGGCCCACAC CTTTGCCGCA
CTGCCCCTGC AATCGGGCTG GGTGGATGGC GAGGTGCTGA TGCTGGACAG CGACAGCCGC
CCTGACTTCC AGGCCCTGCA AAACGCCTTT GACGGCGAGC GCACCGACCA CCTGGTGTTC
TTCGCGTTTG ACCTGCTGTG GCATGACGGC CAGGACCTGC GGCCCCAGCC CGTGGAGCAG
CGCCGCCAGC AGTTGCAGGC CCTGCTGCAC AAGGCGCCTT CGGACCGCCT TCGTTTCAGC
GAGGCCTTTG ACGCCCCGCC CGCCGACCTG GTGGCCGCCG CCTGCCAGCT GGGCCTGGAG
GGCGTGATCG GCAAGCGGCG CGGCAGCGCC TATGCCTCGC GGCGCAGTGC GGACTGGATC
AAGCTCAAGT GCGGCCTGCG CCAGGAATTC GTGATCGCGG GCTACACCGA TCCCCAGGGC
ACGCGCACGG GCCTGGGCGC CCTGGTCCTG GCCGTGCATG GCGAGGACGG CCAGCTGCGC
GCGGCAGGCA AGGTGGGCAC GGGGTTCAAC AGGCGCACAC TGGCCGACCT GCGCCAGCGC
CTGGAGCGCC TTGCCACCGG CACCTCGCCG CTGGCGGACA GCCGGGGCCT TGGCAGCGGG
GTGCACTGGG TGCGCCCCAC GCTGCTGGCC GAGGTCTCGT TCGCGCAGTG GACCGAGGAC
GGCCAGGTCC GCCATGCCGT ATTCCAGGGC CTGCGTGCGG ACAAGCCTGC GCGCAGCATT
GTCAAAGAGG AGCCACAGCA CGTGCCATCG ACCGCATCTT CCGCCAGCGC TGCAGCCACG
CCTGGCGCCG CACGAACGCA AACCCGCAAT GCCAGGGCGG CGCGACTGCC CGCCTCGATG
ACCATCACCC ATCCCGAGCG GGTCATCGAT CCCTCCACCG GCATCACCAA GATGGATCTG
GCGCGCTACT ACGCCACGGT GGCGCCCTTC ATGATCACCC ACCTCAAGTC CCGGCCCGTG
GCCATGGTGC GGGCGCCGGA CGGCATCGAG GGCGAGCTGT TCTTCCAAAA GCACCTCGAC
CAGGCGCCGC TGCAGGGCAT CGCCGCCCTG ACGCCGGAAC TGGACCCCGG CCATGCCCCG
CTGATGGAGG TGTCCCGGCG CGAAGGCCTG GTGGCGGCGG CGCAGATGAA CACCATCGAA
TGGCACACCT GGAACGCGCG CAAGGACCGC ATCGACCGGC CCGACCGCAT GACCTTCGAC
CTGGACCCGG GCGAAGGCGT CCCCTGGCAG CAGGTGCAGG AGGCCGCCAG CCTGCTGCAT
GTGCTGCTGC AGGAGCTGGA GCTGCCGGCC TTCCTCAAGA CCAGCGGCGG CAAGGGCCTG
CACGTGGTCG TGCCCATCAA GCGGCTGCTG GACTGGGACA CCGTCAAGGC CTTCTCGCAG
GCCGTGGTCC AGCACCTGGC CCATGCCGTG CCCCAGCGCT TCGTGGCCAA AAGCGGGCCG
CGCAACCGCG TGGGAAAGAT TTTTGTGGAC TACCTGCGCA ACGGCTTCGG CGCCACCACG
GCCTGCGCGT GGACGGCCCG GGCGCGGCCG GGCATGGGCA TCTCCGTGCC CGTGGCCTGG
AACGAGCTGG ACAGGCTCAC GGGCGGCGCG CACTGGACCA TTCGCTCGGT AGACCAGCGC
CTGCGCCTGG GCAACTCCCC CTGGGAGCAC TACGGCACGG CCGCCGTGGG CCTGGGCCGC
GCCATGAAGG CGCTGGGCTT CGAGGCGCAG CACTGA
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| Protein sequence | MPATRSKFQA SRQARPTNGA AKAATPQASL ALYRQKRDFT RTPEPSAEPS SETIAGQPGA
GALQFVIQKH WASHLHYDFR LELDGSMKSW AVPKGPSYDP ADKRMAVQVE DHPMAYNRFE
GQIPPGQYGA GKVIIWDCGT WLPEGDAAEG YRKGKLKFEL RGHKLQGRWT LVRMRGKDDA
KKPAWLLIKE HDGLERAASE FNVVEDMPDS VAGLPLPTAT APVTTPVATP VTAPMPQSIA
PQLATLVDHA PADAGQWIFE SKFDGYRLLA RIEDGAVRLF TRNGKDWTTK MPALAHTFAA
LPLQSGWVDG EVLMLDSDSR PDFQALQNAF DGERTDHLVF FAFDLLWHDG QDLRPQPVEQ
RRQQLQALLH KAPSDRLRFS EAFDAPPADL VAAACQLGLE GVIGKRRGSA YASRRSADWI
KLKCGLRQEF VIAGYTDPQG TRTGLGALVL AVHGEDGQLR AAGKVGTGFN RRTLADLRQR
LERLATGTSP LADSRGLGSG VHWVRPTLLA EVSFAQWTED GQVRHAVFQG LRADKPARSI
VKEEPQHVPS TASSASAAAT PGAARTQTRN ARAARLPASM TITHPERVID PSTGITKMDL
ARYYATVAPF MITHLKSRPV AMVRAPDGIE GELFFQKHLD QAPLQGIAAL TPELDPGHAP
LMEVSRREGL VAAAQMNTIE WHTWNARKDR IDRPDRMTFD LDPGEGVPWQ QVQEAASLLH
VLLQELELPA FLKTSGGKGL HVVVPIKRLL DWDTVKAFSQ AVVQHLAHAV PQRFVAKSGP
RNRVGKIFVD YLRNGFGATT ACAWTARARP GMGISVPVAW NELDRLTGGA HWTIRSVDQR
LRLGNSPWEH YGTAAVGLGR AMKALGFEAQ H
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