| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4329 |
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| Symbol | |
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| ID | 5749917 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 4737031 |
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| End bp | 4739280 |
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| Gene Length | 2250 bp |
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| Protein Length | 749 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641299432 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001565345 |
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| Protein GI | 160899763 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.116264 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGCCGCT TTCCCCAGCG CCAGCCCGCG ATGAGCAGCC CAGACCATTC CGATCCGCCT
CGCGACGACG AGCACCTGCC CCTGCATGCG CTGCTGGCGC CCGGCGCCGA CCTGCCCCCC
GTCGAACGCT TCCCCCCCTT CCAGCCCGAA GACGACCCGC TGCAGGCTCT GGTGGCCGAG
CTGCGCAACT ACCAGCGCGA ACTGGAAATC CAGAACCGCG TGCTGGACTA CAGCCAGGCC
GTGGCCGAAA GCGCCTCCGA GCGCTTCGAG GCCCTGTTCG CCAGCATTCC CCTGCCCCTG
CTGGTGGTGG ACGAGCACGA CATGGTGGTG CAGGCCAACG CCATGGCGCA CAGCGCCTTC
CAGCCCTCAG AGCATGACCG GCTGCTGGTG AACTTCGCGC CCTTCGTGCA CCCGGACGAC
GCCGAGCGCG TGCGCGAGAC CTTCTCCGCC GCACGCGAGC TGGGCCGCAC CGAGGCCCAC
GAGGTCTGCT TCGAGATCAC CGAGCAGCAC CAGCTGCGCG CCGACCTGCA CGTGGCCTGC
ATCGCCATCC CCCAGCAAAG CGGCCCGCCC ATTGCCCAGT ACCTGTGCGC CGTGGTGGAC
CAGGGCCCGC TGCTGGCCGA GCGCCTGGCG CTGCAGCAGC GCAACCACCA GCTGTTCCTG
AGCGAGCGGC GGCTGGAATC GGTCATCAAC TCGGCGCTGG ATGCCATCAT CTGCCTGGAC
TCGGACCAGC GCATCACCGT CTTCAATCCC ACGGCCGCCG CCCTGTTCCT GTGCCCGCCG
CACGACGCGC TGGGCAGCCC ACTGGAGCGT TTCCTGCCCG ATGCGGCACA GGCCCTGTCC
TTTGCACCGC TGACCACGCA GGCCGTGCTG GGCGAGATGA CGGCGCGCAC GGCCAGCGGC
CGCGAGATTC CGGTCGAGGT CAGTGTCTCC TTCGAGCACC ACAGCGGCGG CGAGACCACC
ACCGTGTTCG CGCGCGACCT CACCAGCCGC AAGAAGGCCG AGGCCCAGCG CAACGAGCTG
GAAGACCAGC TGCGCGAATC GCACAAGATG CAGGCCCTGG GCACCATGGC CGGCGGCATT
GCGCACGACT TCAACAACAT CGTGGGCGCC ATCCTGGGCA ACGTGGAGCT GGCCAAGGCC
GACTGCGGCG GCAATGCCGC AGCCATCGAA AGCCTGCAGG AGATCGAAAA GGCCGGCCGC
CGCGCGCGCG ACCTGGTGCG CCAGATCCTG ACCTTCAGCC GCAACGAGCC ACCCCAGCGC
AAGCCCGTGC AGGCGCGTGA AGTCATGGGC GACACGGCGC GGCTGCTGCG CGTGACCCTG
CCGCCCGCCG TGGAGCTGCA GGTGCATGTG CCGCCGCAGC TGCCCCCCAT GCTTGCCGAC
GCCATGCAGG TGGAGCAGGC CCTGTTCAAC CTGTGCACCA ACGCCATGCA CGCCCTGGGT
GAACGGCGCG GCCTGATCCA GATGGACGCC GACCTGGTGC GCCCCGACCA GCGCCTGTGC
GAGCGCCTGG GCCTGCCGCC CGTCAGCTAC GTGGCGCTGT CGGTGCAGGA CAACGGCCCC
GGCATGGATG CGCGCACGCT GCAGCGCATC TTCGAGCCCT TCTTCACCAC CAAGCCCGTG
GGCCAGGGAA CGGGCCTGGG CCTGCCCGTG GTGCACGGCG TCATGCGCAA CCACGGCGGC
GCCGTGGACG TGTACAGCAT TCCAGGACAA GGCAGCCGCT TCACGCTGTA CTTTCCCCCG
GCCGACGCCC TGGCGCCCGC CGAGTACGTA CCTGCCCAGG CGTCCGTGGC CGAAACGCCG
CCCAGCCTGC CGGAGCCGCT GGCAGCCGCA GAAACCCCGA CCGGCCCGCA GTTCGCCCTG
CTGCCCGACC CGCAGGCCGC ACAGCAGCAT GTGATGTACG TGGACGACGA CCAGGCCCTG
GTCTTCCTCG TGCAGCGCCT GCTGCGCCGT CGCGGCTACC AGGTCAGCGG CTTCACCGAT
CCGCACGAGG CCACCGAGGC GCTGCGCGCC GCCCCCCAGG ACTACGACCT GCTGGTCACC
GACTACAACA TGCCGGGCTA CAGCGGCATC GACCTGGTGT ATGAGGCGCT GTCCATCCAG
CCCCTGCTGC CCATCGCCCT GGCCTCGGGC TACATCACCG CCGAGATCGA GCAGGCCGCC
ATGGCCGCAG GCGCCCGGGC CCTGGTGCAC AAGCCCAATG ACGTGGAGGA GCTGTGCGCC
ACCGTGCACA GGCTCCTCAA TGAACGGTGA
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| Protein sequence | MCRFPQRQPA MSSPDHSDPP RDDEHLPLHA LLAPGADLPP VERFPPFQPE DDPLQALVAE
LRNYQRELEI QNRVLDYSQA VAESASERFE ALFASIPLPL LVVDEHDMVV QANAMAHSAF
QPSEHDRLLV NFAPFVHPDD AERVRETFSA ARELGRTEAH EVCFEITEQH QLRADLHVAC
IAIPQQSGPP IAQYLCAVVD QGPLLAERLA LQQRNHQLFL SERRLESVIN SALDAIICLD
SDQRITVFNP TAAALFLCPP HDALGSPLER FLPDAAQALS FAPLTTQAVL GEMTARTASG
REIPVEVSVS FEHHSGGETT TVFARDLTSR KKAEAQRNEL EDQLRESHKM QALGTMAGGI
AHDFNNIVGA ILGNVELAKA DCGGNAAAIE SLQEIEKAGR RARDLVRQIL TFSRNEPPQR
KPVQAREVMG DTARLLRVTL PPAVELQVHV PPQLPPMLAD AMQVEQALFN LCTNAMHALG
ERRGLIQMDA DLVRPDQRLC ERLGLPPVSY VALSVQDNGP GMDARTLQRI FEPFFTTKPV
GQGTGLGLPV VHGVMRNHGG AVDVYSIPGQ GSRFTLYFPP ADALAPAEYV PAQASVAETP
PSLPEPLAAA ETPTGPQFAL LPDPQAAQQH VMYVDDDQAL VFLVQRLLRR RGYQVSGFTD
PHEATEALRA APQDYDLLVT DYNMPGYSGI DLVYEALSIQ PLLPIALASG YITAEIEQAA
MAAGARALVH KPNDVEELCA TVHRLLNER
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