| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4322 |
|---|
| Symbol | |
|---|
| ID | 5749910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 4726724 |
|---|
| End bp | 4728634 |
|---|
| Gene Length | 1911 bp |
|---|
| Protein Length | 636 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641299425 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_001565338 |
|---|
| Protein GI | 160899756 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.461598 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0714354 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGATC CAGACCAGGA GCCCGTTACA GGCCGCCCCG CTTATCCGCA GCGGGGCGGC
CTGTTGCATT GGGGCACCTG GCAGACGACA GACAGCGCTT TCCCGCGATG GCCGCCGGTG
CACAATGGCC CCCCGCAAGC CTGCACGGCG GACATATACG GGCGCACGCC ACATCAACCA
ATCGGACCCT TGATCCACAC GCAAGACAAC CCCACCGAAG GCGGCCGGGG GCACTGGCCA
ACGGGTGCTG TAGCGCAATG GCTGGTGCAG ACCCTGGCGC AAGCCCTGGC AGCTGCAGCG
CTTCTGGCAC TGCTCACCTG CTTGCTGCCC AACCCACAGG CCGCCCAGGG CATTGCGGTC
TTTCCCGGCA GGAGCATGGC GCCGGCCGCG ATGCTGCTTT ACGCGTACAT GGGCTCGGCC
CTGGCCATCA CGCTGATGAG CCTGATCCTG TGGTGCTGGC TCAGGGAAAG GCTCTACATT
CTTTGCGCCG CGCTCCTGGC AGCCGGCTTT GCCTACGCCG CCTTCCGTTA CCGGCCCCAA
GGCCTGTGGC TGCCCGGCGC CGACCAGCCC CAGCATGCGC TGTCCATCGC CTACTGCAGC
TTCTGTGTGG TGGCGACGGT GTTTTTCAGC CAATTGTTCG AGTTCCGTCG CTATTGGATC
TGGGCTGCGC ACCTCTTCAG CGTGGTGGCC TGGCTGAATG CCATCGCACT GGGCCTGGCA
CTGTTGGGTG GCTATCCGCA GATCTCGCGT GCCGTGGTGT TCACGGCCCT GGTGTCCACA
TCGTTCGGTG CGGTCTTCGT GCTGTACCTG CTGGTGGTAC GAAGGCAGTG GCAATACCTG
CCGGGCGCGC TGGCATTTGC GGTGCCTTCC GCCCTGGGCA TCCTGAACCT GCTGAGAACC
CAGGGCCTGC TGCCGGATGT GGCGCTGCCA TCGGCCCAGA TGCTGTGGTT TGCCGGGCGT
GTTTCCGAGG CCATCCTGCT GGGAATGGCG GTGACCAACC GCACGCGGGT GGCGGAGCGT
GCCCTGCGCA GTGAGCGGAT GCAGGCCCTG TCACGCGCCC AGGCTGCCGA GCGCGAGCTG
GAATCCAAGG TCCTGCAGCG CACCGCACAA CTGCAAACGG CCCAGCAGGC CTTGCAGACC
GCCTTGCACA GCGAGCGCAA GATGCGGCTG GAGCAGCGCC AGTTCTTCAA CATGATCAAC
CACGAGTTCC GCACCCCGCT CACCATCGTG GACGGCGCCG CGACCGAGCT GCAGACGTTC
CCGACGACGG ACGCGGACTC CCTCATCGAG CAGGCGTCGC AGATACGCAG GGCTTCGCGC
CGGCTGATGA CCCTGGTGGA CACCTGCCTG ATCAACGACC GGCTGGACGC GGGCGCGTTC
CGGCTGCAAC TGGAGCAGAC GCCATTGGAT GAACTCCTGG AGGAGTCTGC AGAGCTCGTC
GGCTGGTCCC GGCGGCATCG CCTGAAACTG GATCTGGAAC ACGGCCCGCA GCAATGGCAA
TGCGACCCTG TCCTGGTGCG CATCGCCATC TCCAACCTTG TCGGCAACGC CATCAAATAT
GCCAAGGCGG GCGACATCAC CCTGGCCGCC CGCTGCGATG CGTCCGGTGA CCTGCTGATT
TCCGTCAGCG ACCAGGGACC GGGCCTTGCG CCCGAAGCGG CAGGACAGGT TTTCGAGCCC
TATGAACGCG CAAGCGCCAC CCGGCATGTC AACGGGCATG GTCTGGGCCT GTCCGTGGTG
AGGCGCATCG CCAGGCTGCA CGCAGGCGAC GCGTTCTTCC ATCCGGCTGC CGGAGGCGGG
GCCTGCTTTG TCATCCGGCT GGGCCGGTTC CTGCCCGGCA CGGCAGATGC CCGCCAGGAA
CGTCCACCAG CGGCAAGGCC GGCCGCCGTG CCGCCGGGCA TGCCCGCCTG A
|
|---|
| Protein sequence | MRDPDQEPVT GRPAYPQRGG LLHWGTWQTT DSAFPRWPPV HNGPPQACTA DIYGRTPHQP
IGPLIHTQDN PTEGGRGHWP TGAVAQWLVQ TLAQALAAAA LLALLTCLLP NPQAAQGIAV
FPGRSMAPAA MLLYAYMGSA LAITLMSLIL WCWLRERLYI LCAALLAAGF AYAAFRYRPQ
GLWLPGADQP QHALSIAYCS FCVVATVFFS QLFEFRRYWI WAAHLFSVVA WLNAIALGLA
LLGGYPQISR AVVFTALVST SFGAVFVLYL LVVRRQWQYL PGALAFAVPS ALGILNLLRT
QGLLPDVALP SAQMLWFAGR VSEAILLGMA VTNRTRVAER ALRSERMQAL SRAQAAEREL
ESKVLQRTAQ LQTAQQALQT ALHSERKMRL EQRQFFNMIN HEFRTPLTIV DGAATELQTF
PTTDADSLIE QASQIRRASR RLMTLVDTCL INDRLDAGAF RLQLEQTPLD ELLEESAELV
GWSRRHRLKL DLEHGPQQWQ CDPVLVRIAI SNLVGNAIKY AKAGDITLAA RCDASGDLLI
SVSDQGPGLA PEAAGQVFEP YERASATRHV NGHGLGLSVV RRIARLHAGD AFFHPAAGGG
ACFVIRLGRF LPGTADARQE RPPAARPAAV PPGMPA
|
|---|
| |