Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_4204 |
Symbol | |
ID | 5749792 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 4602520 |
End bp | 4605525 |
Gene Length | 3006 bp |
Protein Length | 1001 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 641299307 |
Product | type III restriction protein res subunit |
Protein accession | YP_001565220 |
Protein GI | 160899638 |
COG category | [V] Defense mechanisms |
COG ID | [COG3587] Restriction endonuclease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.416822 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0251436 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTGC ACTTCGAGCC CAACCTCGAC TACCAGATGC AGGCCATCGA GGCTGTATGC GATCTTTTCC GTGGTCAGGA GGTCTGCCGC ACCGAATTCA CGGTGACCAT GAAATTGCCC GATGACGTGC AGATGTCACT GGGCGTGGCG CAGTCCGACC TTGGCGTTGG CAACCGCTTG ACCCTGCTGG ACGATGAACT GCTCAAGAAC CTCGCGGACA TCCAGTTGCG CGGTGGCTTG CCGCCTTCCA GTTCGCTGAC TTCGGGCGAC TTCACTGTGG AAATGGAGAC CGGCACCGGC AAGACCTATG TGTATCTGCG CTCGATTTTC GAGCTGAACA AACGCTACGG CTTCACCAAG TTCGTGATCG TGGTGCCTTC AGTGGCGATC AAGGAGGGTG TTTATAAAAC CCTGCAGATC ACCGAGGAAC ACTTCAAGGG GCTCTACGCG GGCGTACCCT TCGATTACTT CCTATACGAC TCCGGTAAGC CGGGGCCGGT GCGCAATTTC GCCACGAGCT CCAACATCCA GATCATGGTG GTGACGGTGG GCGCCATCAA CAAGAAGGAT GTGAACAACC TCTACAAAGA GAGCGAGAAA ACCGGCGGCG AGAAGCCCAT CGACCTGATC AAGGCCACCC GGCCGATAAT CATCGTGGAT GAGCCGCAAA GCGTGGACGG CGGCATGGAA GGCCGTGGCA AGGAAGCACT GGACGCCATG AACCCGCTCT GCACGCTGCG CTACTCCGCT ACCCATGTGG ACAAGCACCA CATGGTATTT CGCCTCGATG CCGTCGATGC CTACGAGCGC AAACTGGTCA AGCAGATCGA GGTGGCGTCG GCCACGGTAG AGGACGCGCA CAACAGGCCC TTTGTGCGCC TGGTGAAGGT GGAAAACAAG CGCGGCCGCA TCAGCGCCAA GGTCGAGCTA GATAAACAGA CCGCCACTGG TGTGCAGCGG GCTGAAGTGA CGGTCAGCGA CGGCGACGAC CTCCAGCAGA GCGCCGATGG CCGCGCGATC TATGCCGATT TTCGCGTCGG CGAGATCAAC ACGGCCAAGG GCGAAGCGTT CATGGAGCTG CGCTACCCCG GTGGCGAGGT GTTTTTGCAA CCTGGCCAAG CCCACGGTGA TGTGGATGCG CTTGCCGTGC AACGCGAGAT GATCCGCCGC ACGATCAAGG AACACCTGGA CAAGGAGAAG CACCTGCGCC CGCTGGGCAT CAAGGTGTTG AGCCTGTTCT TCATCGACGC GGTGGACAAA TATCGTCAGT ACGATGCGGA CGGCCAGCCG GTCAAGGGTG TGTATGCGCA GATGTTCGAG GAGGAATATC GCCGTGCCGC CAAGTTGCCG GCTTACCAGA GTTTGTTTGC CGAGATCGAC CTGGAGTCCG CCGCCGAAGA AGTGCACAAC GGTTATTTCT CCATCGACAA GAAAGGCGGC TGGACTGACA CCGCCGAGAA CAATGCGGGT AACCGGGAGA ATGCCGAACG CGCCTACAAC CTGATCATGA AGGAGAAGGA GAAGCTGCTG TCCTTCGGTA CGCCGCTGAA GTTCATCTTC TCCCACTCCG CCCTCAAGGA AGGCTGGGAC AACCCCAACG TGTTCCAGAT TTGCACCTTG CGCGACATCC AGACCGAGCG CGAGCGCCGC CAGACCATTG GCCGTGGCCT GCGTCTGTGC GTCAACCAGG ATGGCGAGCG GGTACGCGGC TTTGAGGTCA ACACCCTGAC CGTGGTGGCC ACGGAAAACT ACGAACAGTT TGCCGAAAAC CTGCAGAAGG AAATCGAGAA AGACACAGGC ATCCGCTTTG GCATCGTGGA GCAGCACCAA TTTGCCGCCA TTGCCGTGAC TGGCGCTGAT GGGCACGCCG CACCGCTGGG CATCGAGCAA TCAAAGGCAC TGTGGGAGCA CCTGAAAGCC GCCGGCCATA TAGATGCCAA AGGCAAGGTG CAGGATTCAC TGAAAACGGC GCTGAAGAAC GGCACCTTGG AACTGCCGGA CGAGTTTGAT GCGCAAAAGG CCCAGATTGC TGAAGTGCTG CGCAAGGTGT CGGGCCGGCT CGATATCAAA AATGCCGATG AACGCAGGCA AGTGCCGCTG CGCAAGGGCA AGGATGGCAA GGCCGTTTAT CTGAGTGACG AGTTCAAGGC ACTGTGGGAC CGCATCAAGC ACCAAACAAC GTACCGCGTG CAGTTCGATA ACGCCAAGTT GGTGACGGAT TGCATCGCAG CGTTGCAGAA GGCCCCGGTG ATTGCCAAAG CACGACTGCA ATGGCGCAAG GCCGACATCT CTATCGGCAA GGCGGGTGTC GCCGCGACGG AGAAAGCGGG CGCGGCGACC GTGGTGCTGG ACGAGGCGGA TATTGAGCTG CCGGATTTGC TGACCGACCT TCAGGATCGC ACCCAGCTCA CCCGGCGCAC CATCGTCAGC ATCCTGACGG GAAGCGGTCG CCTGAACGAC TTCAAACGCA ATCCGCAGCA GTTCATCGAA TTGACTGCCG AAACCATCAA CCGCTGCAAG CGCTTGGCCC TGGTCGATGG CATCAAGTAC CAGAAGCTGG GTGACCAGCA TGTCTATGCG CAGGAGCTGT TCGAGAAGGA AGAGCTCACC GGCTATCTCA AGAACATGCT GCTGGATACC CAGAAGTCGA TCTACGAGCA CGTGGTGTAC GACTCGACCA CTGAGCGGGA TTTCGCCGAT GGGCTGGAGA AGAACGACGC CATCAAGCTC TACGCCAAGT TGCCAGGCTG GTTCAAAGTG CCCACGCCGC TGGGCACCTA CAACCCCGAC TGGGCCGTGT TGGTGGAAGA AGACGGCACT CAGCACCTGT ATTTTGTGGT GGAAACCAAG AGCAGCCTGT TCACCGACGA TATGCGCGAC AAGGAAAGCG CCAAGATCGA ATGCGGCAAG GCGCATTTCA CTGCGCTGGA GGGCGGCGAG AACCCAGCCC GGTATGTGGT TGCGCGCTCG GTTGGTGATC TTTTGACCGA GGCGGCAAAG GGGTAG
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Protein sequence | MKLHFEPNLD YQMQAIEAVC DLFRGQEVCR TEFTVTMKLP DDVQMSLGVA QSDLGVGNRL TLLDDELLKN LADIQLRGGL PPSSSLTSGD FTVEMETGTG KTYVYLRSIF ELNKRYGFTK FVIVVPSVAI KEGVYKTLQI TEEHFKGLYA GVPFDYFLYD SGKPGPVRNF ATSSNIQIMV VTVGAINKKD VNNLYKESEK TGGEKPIDLI KATRPIIIVD EPQSVDGGME GRGKEALDAM NPLCTLRYSA THVDKHHMVF RLDAVDAYER KLVKQIEVAS ATVEDAHNRP FVRLVKVENK RGRISAKVEL DKQTATGVQR AEVTVSDGDD LQQSADGRAI YADFRVGEIN TAKGEAFMEL RYPGGEVFLQ PGQAHGDVDA LAVQREMIRR TIKEHLDKEK HLRPLGIKVL SLFFIDAVDK YRQYDADGQP VKGVYAQMFE EEYRRAAKLP AYQSLFAEID LESAAEEVHN GYFSIDKKGG WTDTAENNAG NRENAERAYN LIMKEKEKLL SFGTPLKFIF SHSALKEGWD NPNVFQICTL RDIQTERERR QTIGRGLRLC VNQDGERVRG FEVNTLTVVA TENYEQFAEN LQKEIEKDTG IRFGIVEQHQ FAAIAVTGAD GHAAPLGIEQ SKALWEHLKA AGHIDAKGKV QDSLKTALKN GTLELPDEFD AQKAQIAEVL RKVSGRLDIK NADERRQVPL RKGKDGKAVY LSDEFKALWD RIKHQTTYRV QFDNAKLVTD CIAALQKAPV IAKARLQWRK ADISIGKAGV AATEKAGAAT VVLDEADIEL PDLLTDLQDR TQLTRRTIVS ILTGSGRLND FKRNPQQFIE LTAETINRCK RLALVDGIKY QKLGDQHVYA QELFEKEELT GYLKNMLLDT QKSIYEHVVY DSTTERDFAD GLEKNDAIKL YAKLPGWFKV PTPLGTYNPD WAVLVEEDGT QHLYFVVETK SSLFTDDMRD KESAKIECGK AHFTALEGGE NPARYVVARS VGDLLTEAAK G
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