| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4150 |
|---|
| Symbol | |
|---|
| ID | 5749738 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 4542282 |
|---|
| End bp | 4544294 |
|---|
| Gene Length | 2013 bp |
|---|
| Protein Length | 670 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641299253 |
|---|
| Product | DNA topoisomerase III |
|---|
| Protein accession | YP_001565166 |
|---|
| Protein GI | 160899584 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0356061 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0728569 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCTGT TCTTGTGCGA GAAGCCCTCC CAGGGCAAGG ATATTGGCCG GATTCTCGGC
GCGACGCAGC GCGGTGAAGG CTGCCTCAGC GGCTCCGGCG TCACGATTAC CTGGTGCATC
GGCCATCTCG TAGAAGCGGC AGCACCCGAA GTCTATGACG CGGCGCTCAA GCGCTGGTCA
CTGGAGCAGT TGCCCATCAT TCCCCAGCAG TGGCGGGTCG AGGTCAAACC CAAGACCGCC
ACGCAATTCA AGGTCGTCAA GGCGCTTCTG GCGAAGGCGA CCCATCTCGT CATCGCCACC
GATGCCGACC GCGAGGGCGA GCTGATCGCC CGCGAGATCA TCGACCTGTG CGGCTACCGT
GGTCCCATCG AGCGCTTGTG GCTGTCGGCG CTCAACGATG CGTCGATCCG CACCGCGCTC
GGCAAGCTGC GACCGTCGTC CGATACGCTG CCGATGTATT ACTCGGCGCT GGCGCGTTCG
CGGGCAGACT GGCTCGTGGG CATGAACCTC AGCCGTCTTT TCACGCTGCT CGGGCGGCAG
GCGGGCTACG ACGGCGTGCT GTCGGTCGGA CGTGTCCAGA CCCCGACCCT GAAGCTGGTC
GTTGATCGCG ACCGCGAAAT CGCGGCTTTC AAGTCGGCGC CGTTCTGGGC CATCGACGTG
TCTCTGTCCA CAGAGGGTCA GGCTTTCTCC GCGCAGTGGG TTGCGCCCGA CGGCTGCACC
GACGACGCCG GTCGTTGCCT GCAACAGCCG GTCGCCCAGC AGGCGGCGCT GCAGATTCGC
GTCGCGGACA ACACCCAGGT GGTGTCGGTC GAGACCGAGC GCGTGCGCGA AGGCCCGCCA
CTGTTGTTCG ACCTGAGCAC CTTGCAGGAG GTCTGTTCCA AGCAGCTCGG GCTGGACGTG
CAGGAGACAT TGCAGATCGC CCAGGCCCTG TACGAGACGC ACAAGGCCAC GACCTACCCG
CGCTCGGACT CCGGCTATCT GCCCGAAAGC ATGTTCGCCG AGGTGCCCGC CGTCCTGGAC
AGCCTGCTCA AGACCGATCC GTCGCTGCGC CCGATCATGA GCCAGCTCGA CCGCTCCCAG
CGTTCGCGTG CATGGAACGA CGGCAAGGTC ACGGCGCACC ACGGCATCAT TCCGACGCTC
GAACCCGCGA ACCTCTCTCC TCTGAGCGAG AAGGAACTGG CGGTGTACCG GCTGATCCGG
GCGCATTACC TGGCGCAGTT CCTCCCGCAC CACGAGTTCG ACCGTACCGT GGCTGAGTTT
TCCTGCGGCC AGCAGATGCT GGTGGCCACC GGTAAACAGG TGGTCGTCAA AGGCTGGCGT
CTGGTGCTGG CCGAACCGCA AGCGGATGAG GACGGCGACG ACGCGGCGCG CAGCCAGGTG
CTGCCCCCGC TGCGTGGGGG CCTGGCGTGC CAGGTGGCTG AGGTCGAGAT CAAGGCGCTC
AAGACGATGC CGCCCAAGCC CTACACCCAG GGCGAACTGG TCAAGTCGAT GAAGGGCATT
GCGCGCTTCG TGACCGACCC GCGCCTGAAG CAGAAGCTCA AAGACACGAC GGGCATCGGC
ACCGAGGCGA CGCGGGCCAA CATCATCAGC GTGCTGATCG CCCGTGGCTA CATCGTGAAG
AAGGGGCGCT CCATTCGCGC ATCGGATGCG GCGTTCACGC TGATCGACGC CGTGCCCGCA
GCGATTGCAG ACCCCGGCAC GACGGCAGTG TGGGAGCAGG CGCTCGACAT GATCGAGGCG
GGACAGCTCA CCCTGGACGT ATTCCTCAGC AAGCAGGCCG CCTGGATTTC GCAGTTGATC
GCGCAGTACG GCAGCATGTC CCTGTCCATC AAGCTTCCCC ATGGGCCAGC ATGTCCGCAG
TGCGGCGCAG CGACGCGCCA GCGCACCGGC AAGAGCGGCC CATTCTGGTC GTGCAGTCGC
TACCCCGACT GCAAAGGCAC GCTGCCGGTC GAATCCGGTA CGCCCAAGCG TGGCGCTTCG
CGCTCGCGTA GCAGCGGCCG CAAAGGCGCC TGA
|
|---|
| Protein sequence | MRLFLCEKPS QGKDIGRILG ATQRGEGCLS GSGVTITWCI GHLVEAAAPE VYDAALKRWS
LEQLPIIPQQ WRVEVKPKTA TQFKVVKALL AKATHLVIAT DADREGELIA REIIDLCGYR
GPIERLWLSA LNDASIRTAL GKLRPSSDTL PMYYSALARS RADWLVGMNL SRLFTLLGRQ
AGYDGVLSVG RVQTPTLKLV VDRDREIAAF KSAPFWAIDV SLSTEGQAFS AQWVAPDGCT
DDAGRCLQQP VAQQAALQIR VADNTQVVSV ETERVREGPP LLFDLSTLQE VCSKQLGLDV
QETLQIAQAL YETHKATTYP RSDSGYLPES MFAEVPAVLD SLLKTDPSLR PIMSQLDRSQ
RSRAWNDGKV TAHHGIIPTL EPANLSPLSE KELAVYRLIR AHYLAQFLPH HEFDRTVAEF
SCGQQMLVAT GKQVVVKGWR LVLAEPQADE DGDDAARSQV LPPLRGGLAC QVAEVEIKAL
KTMPPKPYTQ GELVKSMKGI ARFVTDPRLK QKLKDTTGIG TEATRANIIS VLIARGYIVK
KGRSIRASDA AFTLIDAVPA AIADPGTTAV WEQALDMIEA GQLTLDVFLS KQAAWISQLI
AQYGSMSLSI KLPHGPACPQ CGAATRQRTG KSGPFWSCSR YPDCKGTLPV ESGTPKRGAS
RSRSSGRKGA
|
|---|
| |