| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4125 |
|---|
| Symbol | |
|---|
| ID | 5749712 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 4524009 |
|---|
| End bp | 4524617 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641299227 |
|---|
| Product | ERF family protein |
|---|
| Protein accession | YP_001565141 |
|---|
| Protein GI | 160899559 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.472309 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00000000689815 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCAA TTTCGGCAGC ACTGGTAAAG GCCCAGAAGG AGTTTGGCCC TGCGCTCAAG
ACCAGCCAGA ACCCCCATTT CCGCAGCAAG TACGCAGACC TGAGCGCGTG CGTTGAAGCC
GTGATCGACG GCCTCAACAA CAACGGGATC ATGCTGATGC AGCCGTGCCA TGAAGACCCG
AGTGGCGTGA CCGTAGAAAC GCTGTTCATC CACGAATCCG GCGAGCAGAT CAGCGCAGGG
AAGCTGCACG TCCCGGCGTC CAAGCAGGAC CCCCAAGGCT ATGGATCGGC ACTGACCTAC
GCGCGCCGCT ACGGACTGAT GGCGGCATGC GGTATCGCCC CGGAAGACGA TGACGGCAAT
GCTGCTTCCA AGAAGCCTGC GCCGCGTCAC AAGCCAACTG ATGGCGCCTT GGTGTCTGCA
GAGCGCATGG CTGTATGTGA CAGCGTTGTT CGGGCCATTA ATGAGCGCAT GGATGCCAAC
GACGTGCATG GCGCCTACGG CGAATTGATC GGTATCACCG ATCCAGAAGA GAAGACATAC
CTCTGGCCAA AGCTTGACTC GAAGACACGC AGCAGCCTCA AGGCTCATGC CCAATCCATC
AAAAACTGA
|
|---|
| Protein sequence | MQAISAALVK AQKEFGPALK TSQNPHFRSK YADLSACVEA VIDGLNNNGI MLMQPCHEDP
SGVTVETLFI HESGEQISAG KLHVPASKQD PQGYGSALTY ARRYGLMAAC GIAPEDDDGN
AASKKPAPRH KPTDGALVSA ERMAVCDSVV RAINERMDAN DVHGAYGELI GITDPEEKTY
LWPKLDSKTR SSLKAHAQSI KN
|
|---|
| |