Gene Daci_4113 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_4113 
Symbol 
ID5749700 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp4516397 
End bp4517047 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content59% 
IMG OID641299215 
Productputative phage repressor 
Protein accessionYP_001565129 
Protein GI160899547 
COG category[K] Transcription 
COG ID[COG2932] Predicted transcriptional regulator 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0271974 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000858644 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAAGGAG CGAACAACGA AACCCTCGCG GCGAACGCCG CCATGCTCTT CGGCGAGAAG 
TCCATCGCTG GGCTTCGGGC TGAAATGAAG CGGGATGGCT ACGACATCGG GCAAGGCACG
CTTGGACGGA TCAAGAACGG AGAAACCGGG GTCCGGATGG AGTCGCTGCA GAAGTTCGCC
GACTACTTCC GCGTCGACAT AGACACCCTG CTTCGTGGGC AGGTGGATGA TGAGGATGAC
TACATCCAGA TATCGCGCCT GAGCGTCGAG GTGGGCGCTG GGCCAGGTCG GTCAAACGGC
GTTGTCGAGC ACCTGAGCGC CCTTCAGTTC CGTCGAGACT TCCTTCGCGC CGCAGGCGTC
AGTCCACTGA ACGCAGCAGT GGTCAATGTG GTGGGGACCA GCATGGAGCC GACCATCAGA
GATGGCTCCA TCTTGCTGCT GAACCGGGCG GATAAAGAGC CGCGCAATGG CAGTATCTAC
GCGTTCTCCT GGGACGGAGA CATGCTCGTG AAGCGCTTCC AGAGGGTAAG CGATGTATGG
CATGCCGTAT CTGACAATGC GGACAAAGAC GAGCATCCAG ACATCGTGGT TGACGGAAAG
GCCGAAGCCT TAATCCAGGG TCGCGCGATA TGGATGGGAA CCAAGCTCTG A
 
Protein sequence
MQGANNETLA ANAAMLFGEK SIAGLRAEMK RDGYDIGQGT LGRIKNGETG VRMESLQKFA 
DYFRVDIDTL LRGQVDDEDD YIQISRLSVE VGAGPGRSNG VVEHLSALQF RRDFLRAAGV
SPLNAAVVNV VGTSMEPTIR DGSILLLNRA DKEPRNGSIY AFSWDGDMLV KRFQRVSDVW
HAVSDNADKD EHPDIVVDGK AEALIQGRAI WMGTKL