| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4004 |
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| Symbol | |
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| ID | 5749591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 4409303 |
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| End bp | 4411765 |
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| Gene Length | 2463 bp |
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| Protein Length | 820 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641299106 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001565020 |
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| Protein GI | 160899438 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00611465 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.165942 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAGCC AGCCCCCAGC CCATGTGCCG GTACTGCAGC TGGTGCAGCG CATCTGGCCC
CTGGTGCTGG TGGTCGTGGT GCTGGTGGTC ATGGCCAGCG GCAGCCTGTA CCTGGTGTCT
GCGGTGCGGG CCTTCGTGGC CGGGGAAAGC CTGTGGTCCA AGGCACAGAA GGACGCCATC
TACGCCCTGA GCCGCTATGT GGACAGCGGC TCGGCGCGAG ATCTGGCGCG CTTCGAGCAG
GCCATGGCCA TTCCCGCGGG CGACTGGCAG GCGCGCATGG CGCTGGACGA TGTGCCAGCC
AGGGTCAAGG ATGCGCGTGA CGGCATTCTT CTGGGAGGCA ACCACCCTGA CGATGCCGAG
GCGCTGATCT GGCTCATGCA GACCTTCCGC CATGTCGAGC TTCTGGAAGA GCCTTATCGC
TATTGGAAAC AAGGCGATCA GTACCTGCAG CAGCTCGACA GGCTGGCCCA GGAGATAGAG
CAGCGCCACG CCGTGGGCAG CGTCAGCGCC GAGGACGCCA TCACCTGGAA GCGCGAGATC
GAGCAAATCA ACGCCGGCGT CACGACGGCC ACCCAGCAGT TCAGCGCCTC GCTGGGCCGC
AGTTCACGGC AGATGGTGAT GTGGCTGCAG GGCATCCATC TGGTGCTGGG TGTGGCGCTG
ATCCTCGTGG CGCTCTGGCA TACACGGCGC ATGCTGCAGC AGCGCCAGCA GGTGCAAAAC
GACCTGCTGA CGGAAAAGGA AAGGGCCCAG ACCACGCTGG CCTCGCTGGG GGACGCCGTG
ATCACCACGG ACGCCCAGGG CGTGGTGGAC TATGCCAATC CCGCCGCGCT GGGCCTGCTG
GGCAGCAGCG AGCAGCAGCT CAAGGGCCAG CACCTGGCCA AGGGCCTGCA TTTCAACAGC
ATTGACACCA CCCAGACCGC GGAAAGCCTG CTGGCCCATT TGCTGTCGGG CCAGCAATTG
CGCGAGGAGC ACACGCGCTG GCTGCGGCGC CATGACCGCA GCATCGTGCC GGTCAAGCTC
ATGGGGTCGG CCATCAGCGG CGGCGGAGAG CGCCCGGCCG GTGCGGTGAT CGTGCTCAGG
GATGTCTCGC GCGAGCAGCA GTACCTGGAC CAACTGTCTT GGCATGCCAG CCACGACGGG
CTGACCGGGC TGGAGAACCG CGTCGAGTTC GAGCGCCGCC TGCAGCGCCT GCTCAACCAG
GGCCAGCACA GGCTGCGGCC CTCGGCCGTG CTGTACATGG ACCTGGACCA GTTCAAGCTC
ATCAACGAGA CCTGCGGCCA CCCGGCGGGC GACGAGATGC TGTGCGAGGT CAGCCGCCTG
CTGCTGCACA ACCTGCGCGA GACCGACACC CTCGCGCGGC TGGGCGGAGA TGAATTCGGC
GTTCTTCTGG AGAACTGCCC GCCCGAGCCC GCCCTGCGCA TTGCCGAGAA GCTGCGCCAG
GCGACCGAGG CCCTGCACGT GCACTGGGGC AAGCAGGTGC TGCGCACGGG CCTGAGCATC
GGCCTGGTGC ACATCGGCGG CGAGGTCCAG TCGGCCCAGG ACCTGCTGCG CATGGCCGAC
ATGGCCTGCT ACCGCGCCAA GGAGCGCGGC CGCAACCGCA TCTACGTCTA CCGCAGCGAC
GATGGCGAGT ACACCCGCCA CGTCAGCGAG ATGGAATGGG TGACACGCAT ACGCATGGCG
CTGGAGCAGG AGCGCTTTTG CCTGTACGCC CAGAGCATTG CACCGTTGCA GCCCGACGGC
CAGCGGGGCC TGCACTTCGA GGTGCTGCTG CGGCTGCGCG ACGAGCAGGG CCAGATCATC
TCGCCGGCCA CCTTCATTCC CGCGGCCGAG CGCTACGGCA TCATGCCCAC GGTGGACCGC
TGGGTGATCG CCAGAACGCT GGCCACGCTG GCCCAGCATC CGGCCGCACT GCGCCACATC
GACACCTGCG CCATCAACCT GTCAGGCCCC AGCCTGGATG ACGACGGGCT GCTGGACTTC
GTGCAGGAAC AGCTGAGCAC GCACGGCATT GCGCCGCAGC TGCTGTGCTT CGAGATCACG
GAGACCAGTG CCATCGCCAG CCTGTCCAGT GCCACCAGGC TGATCCAGGC CCTGCGCACC
CTGGGCTGCC GCTTTGCGCT GGACGACTTT GGCGTGGGCA TGTCCTCGCT GACCTATCTG
AAGCAGCTGC CCGTGGACTA TCTGAAGATC GACGGCGGCT TTGTGCGCGA CATGCTCCAG
GACCCCAGCA ACCACGCCAT GGTGGAGATG ATCAACCGCA TAGGCCACAT CCTGGGCAAG
CGCACCGTGG CCGAGTATGT GGAAACCCGC GAGATCGCCC AGGCCCTTCA GGCCGTGGGC
GTGGACTATG CACAGGGCTT TGCCCTGGCA CGGCCCGTGC CGCTGGACAC GCATTACTTT
GAAAGCGGCG CCCAGGCCGC CCGCCGCGAA TGGCAGGGCA CGCTGGCGCC GGCCGCCAGC
TAG
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| Protein sequence | MQSQPPAHVP VLQLVQRIWP LVLVVVVLVV MASGSLYLVS AVRAFVAGES LWSKAQKDAI
YALSRYVDSG SARDLARFEQ AMAIPAGDWQ ARMALDDVPA RVKDARDGIL LGGNHPDDAE
ALIWLMQTFR HVELLEEPYR YWKQGDQYLQ QLDRLAQEIE QRHAVGSVSA EDAITWKREI
EQINAGVTTA TQQFSASLGR SSRQMVMWLQ GIHLVLGVAL ILVALWHTRR MLQQRQQVQN
DLLTEKERAQ TTLASLGDAV ITTDAQGVVD YANPAALGLL GSSEQQLKGQ HLAKGLHFNS
IDTTQTAESL LAHLLSGQQL REEHTRWLRR HDRSIVPVKL MGSAISGGGE RPAGAVIVLR
DVSREQQYLD QLSWHASHDG LTGLENRVEF ERRLQRLLNQ GQHRLRPSAV LYMDLDQFKL
INETCGHPAG DEMLCEVSRL LLHNLRETDT LARLGGDEFG VLLENCPPEP ALRIAEKLRQ
ATEALHVHWG KQVLRTGLSI GLVHIGGEVQ SAQDLLRMAD MACYRAKERG RNRIYVYRSD
DGEYTRHVSE MEWVTRIRMA LEQERFCLYA QSIAPLQPDG QRGLHFEVLL RLRDEQGQII
SPATFIPAAE RYGIMPTVDR WVIARTLATL AQHPAALRHI DTCAINLSGP SLDDDGLLDF
VQEQLSTHGI APQLLCFEIT ETSAIASLSS ATRLIQALRT LGCRFALDDF GVGMSSLTYL
KQLPVDYLKI DGGFVRDMLQ DPSNHAMVEM INRIGHILGK RTVAEYVETR EIAQALQAVG
VDYAQGFALA RPVPLDTHYF ESGAQAARRE WQGTLAPAAS
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