| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4001 |
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| Symbol | |
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| ID | 5749588 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 4404384 |
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| End bp | 4406522 |
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| Gene Length | 2139 bp |
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| Protein Length | 712 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641299103 |
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| Product | excinuclease ABC subunit B |
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| Protein accession | YP_001565017 |
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| Protein GI | 160899435 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
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| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0336538 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTCTA GCGATCTCGC CGGCCGATAC TCACTTTTGC GAACCCACGT CATGCACGAA
GTCTCTGATT CCTCTCCAGC ACCTGAGGCC TCCGGCCAGT TCGTGCATTT CGCGGACTCC
CCCTTCGAGC TGTTCCAGCC CTATCCGCCG GCCGGCGATC AGCCCGCAGC CATTGAAAAG
CTGGTCGAAG GCATCCAGGA CGGCGAATCC TTCCAGACCT TGCTGGGCGT GACGGGCTCG
GGCAAGACCT TCACCATGGC CAACGTGATC GCCCGCCTGG GCCGCCCGGC CATTGTCTTC
GCGCCCAACA AGACGCTGGC AGCGCAGCTG TACAGCGAAT TCCGCGAGTT CTTTCCCAAG
AACTCCGTCG AATACTTCGT CAGCTACTAC GACTACTACC AGCCCGAGGC CTATGTGCCC
CAGCGCGACC TGTTCATCGA AAAGGACAGC GCCATCAACG AGCACATCGA GCAGATGCGG
CTGTCGTGCA CCAAAAGCCT GATGGAGCGG CGCGACGTGG TCATCGTCGC CACGGTCTCG
GCCATCTACG GCATCGGCGA GCCCGAAAGC TACCACCGCA TGATCATGAC GCTGCGCACC
GGCGACCGCA TCAACCAGCG CGACGTCATC GCGCAACTGA TCCGCATGCA GTACCAGCGC
AACGACCAGG ACTTCAGCCG GGGCAAGTTC CGCGTGCGCG GCGACACCAT CGACGTCTTC
CCCGCCGAGC ATTCCGAGCT GGCCATCCGC ATCGAACTGT TCGACGACGA GGTCGAAAGC
CTGCAATTGT TCGACCCGCT CACGGGCCGC GTGCGCCAGA GCATTCCGCG CTTCACCGTC
TACCCCAGCA GCCACTACGT CACGCCGCGC GACAAGGTCC TGGCCGCCGT GGAAACCATC
AAGCTGGAGC TGGCCGAGCG GCTCAAGCAA CTGGTGGGAG ACGGCAAGCT GGTCGAGGCC
CAGCGCCTGG AGCAGCGTAC GCGCTTCGAT CTGGAGATGC TCACCGAGGT CGGTCACTGC
AAGGGCATCG AGAACTACAC CCGCCACCTC TCAGGCGCCG CACCCGGCGA GCCGCCCAGC
ACCCTGACCG ACTACCTGCC CGGCGACGCC CTCATGTTCC TGGACGAGAG TCACCAGATG
ATCGGCCAGC TCAACGCCAT GTACAGCGGC GACCGCTCGC GCAAGACCAC GCTGGTGGAA
TACGGCTTCC GGTTGCCTTC GGCGCTGGAC AACCGGCCGC TCAAATTCGA GGAATTCGAG
CAGCGCATGC GCCAGGTCAT CTTTGTCTCC GCCACGCCGG CAGACTACGA GAAGACCCAC
TCGGGCCAGG TCGTGGACCA GGTCGTTCGC CCCACAGGCC TCATCGATCC TGAAATCGAA
GTACGCCCGG CCACCAATCA GGTGGACGAC GTGCTGCAGG AAATCCGCCT GCGCGTCGAA
CGCACGGAGC GTGTTCTCAT CACCACGCTG ACCAAGCGCA TGGCCGAGCA ACTCACTGAC
TACCTGAGTG AAAACGGCGT CAAGGTGCGC TATCTGCACT CCGACGTGGA AACGGTGGAG
CGTGTGGAGA TCATTCGTGA CCTGCGCCTG GGTGTCTTTG ACGTGCTCGT GGGCATCAAC
CTGCTGCGCG AGGGGCTGGA CATCCCCGAA GTCTCGCTGG TCGCCATCCT CGATGCCGAC
AAGGAAGGCT TTCTTCGCGC CGAACGCAGT CTCATCCAGA CCATCGGCCG CGCCGCACGC
AACCTGCATG GCAAGGCCAT CCTCTATGCG GACCGTGTCA CGGAGTCCAT GAAGAAGGCC
ATTGGCGAGA CCGAGCGCCG CCGTGCCAAG CAAATAAGCT TCAACGAGGA AAACGGAATC
GAACCCAAGC AGATTGTCAA GCGGGTGAAA GACCTGATTG ATGGTGTCTA CAGCGAAAAA
AGTGGCAAGG AAGCGGAACG CCTGCAGGCC AATCAGCTCG AAAGAGCGCG TGTCGAGGAC
ATGTCCGAAA AAGATGTGGC CAAGGAAATC AAGCGTCTGG AGAAGCAGAT GCTCGAACAT
GCGCGCAGCC TGGAGTTCGA ACAGGCTGCG CGGGTGCGCG ATCAGTTGGC GCTGCTCAAG
GAGCAACTGT TCGGAGGCTC ATCCGTGCAG GTTTCCTGA
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| Protein sequence | MNSSDLAGRY SLLRTHVMHE VSDSSPAPEA SGQFVHFADS PFELFQPYPP AGDQPAAIEK
LVEGIQDGES FQTLLGVTGS GKTFTMANVI ARLGRPAIVF APNKTLAAQL YSEFREFFPK
NSVEYFVSYY DYYQPEAYVP QRDLFIEKDS AINEHIEQMR LSCTKSLMER RDVVIVATVS
AIYGIGEPES YHRMIMTLRT GDRINQRDVI AQLIRMQYQR NDQDFSRGKF RVRGDTIDVF
PAEHSELAIR IELFDDEVES LQLFDPLTGR VRQSIPRFTV YPSSHYVTPR DKVLAAVETI
KLELAERLKQ LVGDGKLVEA QRLEQRTRFD LEMLTEVGHC KGIENYTRHL SGAAPGEPPS
TLTDYLPGDA LMFLDESHQM IGQLNAMYSG DRSRKTTLVE YGFRLPSALD NRPLKFEEFE
QRMRQVIFVS ATPADYEKTH SGQVVDQVVR PTGLIDPEIE VRPATNQVDD VLQEIRLRVE
RTERVLITTL TKRMAEQLTD YLSENGVKVR YLHSDVETVE RVEIIRDLRL GVFDVLVGIN
LLREGLDIPE VSLVAILDAD KEGFLRAERS LIQTIGRAAR NLHGKAILYA DRVTESMKKA
IGETERRRAK QISFNEENGI EPKQIVKRVK DLIDGVYSEK SGKEAERLQA NQLERARVED
MSEKDVAKEI KRLEKQMLEH ARSLEFEQAA RVRDQLALLK EQLFGGSSVQ VS
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