Gene Daci_3965 details

Gene Information

• Locus tag: Daci_3965
• Symbol: prpE
• ID: 5749548
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Delftia acidovorans SPH-1
• Kingdom: Bacteria
• Replicon accession: NC_010002
• Strand: -
• Start bp: 4366404
• End bp: 4368290
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 641299063
• Product: propionyl-CoA synthetase
• Protein accession: YP_001564981
• Protein GI: 160899399
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
• TIGRFAM ID: [TIGR02316] propionate--CoA ligase

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 27
• Fosmid unclonability p-value: 0.123935
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCCCCGC GTTTCGACGA TTTCCACCGC CGCTCCATCG AGGAGCGCGA TGCCTTCTGG 
GCCGAGCAGG CCCGCCGCAT CGACTGGCAT GTGCCGCCCC AGCGCATCTG CGACTACGAC 
AATCCGCCAT TTGCACGGTG GTTTGTCGGG GGGCAGACCA ATCTCTGCCA CAACGCCGTG 
GACCGGCACC TGGCCGAGCG CGCCGACCAG AACGCGCTGA TCGCCATCTC CACCGAGACC 
GGCACGGAAA AGGTCTACAC CTACCGCGAA CTGCATGCCG AGGTGCAGCG CATGGCCGCC 
GTGCTGCAGT CGCTGGGCGT GCACAAGGGC GACCGCGTCC AGATCTACAT GCCCATGATT 
GCCGAGGCGG CCTTTGCCAT GCTGGCCTGC GCGCGGCTGG GTGCCATCCA TTCGGTGGTG 
TTCGGCGGCT TTGCCTCGGC GGCGCTGGCC TCGCGCATCG ATGATGCCGA GCCCAAGGTC 
ATCATCAGTG CCGACGCGGG CTCGCGCGGC GGGCGCGTCG TGGCCTACAA GCCCTTGCTG 
GACGAGGCCC TGCAGCTGGC CAGCCACAAG CCAGCGGCCG TGCTCATCGT GGACCGTGGC 
CTGGCGCCTG CGCCCATGCG CGCCGGCCGT GACCACGACT GGGCCAGCCT GCGTGCGCTG 
CACGCCGACG CCCAGGTCGC CTGCACCTGG GTGGAATCCA CCGACCCCAG CTACACGCTC 
TACACCAGCG GCACCACGGG GCGCCCCAAG GGCGCGCAGC GCGATACGGG CGGCTACACG 
GTGGCGCTGG CCGCCAGCAT GCCGCTGATC TTCGGGGCCG AGGCAGGGCA GACTTTTTTC 
TGCACCAGCG ACATCGGCTG GGTCGTGGGC CACAGCTACA TCATCTATGC GCCGCTGATC 
GCAGGCATGG CCACCGTGCT CTACGAGGGC CTGCCCATAC GCCCCGACGC GGGCATCTGG 
TGGAGCATCG TGGAGAAATA CCGGGTCACC CACATGTTCT CGGCGCCCAC GGCCATCCGC 
GTGCTCAAGA AGCACGATGC CGAGTACCTG CACCGCCACG ATATCTCCAG CCTCAAGGCG 
CTGTGGCTGG CCGGCGAGCC GCTGGACGAG CCCACGGCGC AGTGGATCAG CCAGGCCCTG 
GGCAAGCCCA TCATCGACAA CTACTGGCAG ACCGAGACCG GCTGGCCCAT CCTCACGCTG 
TGCAACGGCG TGGAGCAGCA GACCACGCGC TTCGGCAGTC CCGGCAAGGC CGTCTATGGC 
TATGACGTGA AACTGATCGA CGAGGCCACG GGCGAGGAAC TGCTCGGTGC CGGGCAAAAG 
GGCGTGCTGG CCATCGAGGG ACCGCTGCCG CCGGGCTGCA TGCAGACCGT CTGGCGTGAC 
GACCAGCGCT TCGTCAACAC CTACTGGAAA AGCATTCCAG GCCGCATGGT CTACAGCACC 
TTCGACTGGG GCATTCGCGA CGAGGACGGC TACTTCTTCA TCCTGGGCCG CACGGACGAC 
GTGATCAACG TGGCCGGCCA CCGTCTGGGC ACGCGCGAGA TCGAGGAATG CATCTCCGCC 
CATCCCCAGG TGGCCGAAGT CGCCGTGGTC GGCGTGGCCG ATACGCTCAA GGGCCAGGTG 
GCGCTGGCCT TTGCCGTGCC CCGGACGGCG CTGGAGGGCG AGGCCGAGCG CGCGGCGCTG 
CAGGCCGATG TGATGAAGCT GGTCGATGCG CGGCTGGGCG CCGTGGCCCG GCCCTCGCGC 
GTGGTCTTCG TCAGTGCGCT GCCCAAGACG CGCAGCGGCA AGCTGCTGCG CCGCGCCATG 
CAGGCCGTGG CCGAGGGGCG CGACCCGGGC GATCTCAGCA CCATGGAAGA CCCGGCTGCG 
CTGGCCCAGG TGCAGCAGCA GCTGTGA 

 

Protein sequence

MAPRFDDFHR RSIEERDAFW AEQARRIDWH VPPQRICDYD NPPFARWFVG GQTNLCHNAV 
DRHLAERADQ NALIAISTET GTEKVYTYRE LHAEVQRMAA VLQSLGVHKG DRVQIYMPMI 
AEAAFAMLAC ARLGAIHSVV FGGFASAALA SRIDDAEPKV IISADAGSRG GRVVAYKPLL 
DEALQLASHK PAAVLIVDRG LAPAPMRAGR DHDWASLRAL HADAQVACTW VESTDPSYTL 
YTSGTTGRPK GAQRDTGGYT VALAASMPLI FGAEAGQTFF CTSDIGWVVG HSYIIYAPLI 
AGMATVLYEG LPIRPDAGIW WSIVEKYRVT HMFSAPTAIR VLKKHDAEYL HRHDISSLKA 
LWLAGEPLDE PTAQWISQAL GKPIIDNYWQ TETGWPILTL CNGVEQQTTR FGSPGKAVYG 
YDVKLIDEAT GEELLGAGQK GVLAIEGPLP PGCMQTVWRD DQRFVNTYWK SIPGRMVYST 
FDWGIRDEDG YFFILGRTDD VINVAGHRLG TREIEECISA HPQVAEVAVV GVADTLKGQV 
ALAFAVPRTA LEGEAERAAL QADVMKLVDA RLGAVARPSR VVFVSALPKT RSGKLLRRAM 
QAVAEGRDPG DLSTMEDPAA LAQVQQQL