| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3963 |
|---|
| Symbol | |
|---|
| ID | 5749546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 4363530 |
|---|
| End bp | 4364849 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641299061 |
|---|
| Product | 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein |
|---|
| Protein accession | YP_001564979 |
|---|
| Protein GI | 160899397 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1519] 3-deoxy-D-manno-octulosonic-acid transferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.256416 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCAC GCTCTCCCAC GTCCTGGGCG CGCGCGCTGT ACAGCGCCGT GACCTGGGCG
GCGCAGCCGC TGCTGCGCCG CAAGCTGCTG CGCCGAGCCG AGGCCGAGCC CGTCTATGCC
GAGCACATTC CCGAGCGCTT TGGCCGCTAC CAGCCGGCCA CGCTGGGGCA GGACGGACGC
GGCCGGTGGA TCTGGATCCA TGCCGTATCG CTGGGCGAGA CGCGCGCTGC CGCCATCTTG
CTGACCGCGC TGCGCGAGCG CCTGCCCGGC ATGCGCCTGC TGCTGACCCA TGGCACGGCC
ACGGGCCGCA CCGAAGGCCG CCGGCTGCTG CAGCCCGGCG ACCTGCAGGT CTGGCAGCCC
TGGGATACCC CAGCGGTCGT GCGCCGCTTC GTGCAGCAAT TCAGGCCCGC GGTCGGCGTG
CTCATGGAGA CCGAAGTGTG GCCCAACCTG GTCGCCATCT GCCGCGAAGA AGGCGTGCCG
CTGGCGTTGG CCAACGCGCG GCTCAGCGAC AAATCGCTGG GCCAGGCGCT GCGCGTGGCG
CCGCTGGCGC GGCCCACCTA TACCGCCCTG GCTGCCGTCT GGGCACAGAC CGAGGACGAT
GCCCGGCGCT TGCGCCTGCT GGGTGCGCCC GTGCGCGGCG TGCTCGGCAA CCTGAAGTTC
GATGCGCGTC CGGACGCCGC GCTGCTGGAG CGCGCCCGGC AATGGAAGTC CGGCCTGTCC
CGCCCTGTGG TGCTGCTGGC CAGCAGCCGC GAGGGCGAGG AGGCCATGCT GCTGCCCGCC
CTGCGCACGC TGGGGCCGGC AGGCCGGGCC GTGCAATGGC TGGTCGTGCC GCGCCATCCG
CAGCGCTTTG ACGAAGTGGC GGCGCTGCTG GCTGGCGGCG GCCTGCATGT CTCGCGCCGC
AGCCAGTGGG TGGGTGGCCC GCCCTGCGGG GCTGCGGCGG ATGACATCGA CATCTGGCTG
GGTGATTCGC TGGGCGAGAT GGCCCTGTAC TACGGCCTGG CCGACGCCAC GCTCATGGGC
GGCAGCTTTG CGCCGCTGGG CGGCCAGAAC CTCATCGAGG CCCTGGCCTG CGACTGCCCC
GTGGTGCTGG GGCCGCATAC CTTCAACTTC AGCGAAGCCT CGGATCTGGC CTGCGAAGCC
GGCGCCGCGC TGCGGGCGCC CGACATGGAG CACGGGCTGC GCCTGGCCGT GGACCTGGCC
GGGGACCGCC AGTCCCACGC CCATGCCGTG GCCCAGGCGC GCGGCTTCCT GGACCAGCAT
CGCGGGGCCG CACAGGCCAC GGCGCAGGCG GTGGCCGGGC TGTTGCAGTC GCTCGCCTGA
|
|---|
| Protein sequence | MTSRSPTSWA RALYSAVTWA AQPLLRRKLL RRAEAEPVYA EHIPERFGRY QPATLGQDGR
GRWIWIHAVS LGETRAAAIL LTALRERLPG MRLLLTHGTA TGRTEGRRLL QPGDLQVWQP
WDTPAVVRRF VQQFRPAVGV LMETEVWPNL VAICREEGVP LALANARLSD KSLGQALRVA
PLARPTYTAL AAVWAQTEDD ARRLRLLGAP VRGVLGNLKF DARPDAALLE RARQWKSGLS
RPVVLLASSR EGEEAMLLPA LRTLGPAGRA VQWLVVPRHP QRFDEVAALL AGGGLHVSRR
SQWVGGPPCG AAADDIDIWL GDSLGEMALY YGLADATLMG GSFAPLGGQN LIEALACDCP
VVLGPHTFNF SEASDLACEA GAALRAPDME HGLRLAVDLA GDRQSHAHAV AQARGFLDQH
RGAAQATAQA VAGLLQSLA
|
|---|
| |