| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3944 |
|---|
| Symbol | |
|---|
| ID | 5749527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 4343476 |
|---|
| End bp | 4344123 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641299042 |
|---|
| Product | pyridoxamine 5'-phosphate oxidase |
|---|
| Protein accession | YP_001564960 |
|---|
| Protein GI | 160899378 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0259] Pyridoxamine-phosphate oxidase |
|---|
| TIGRFAM ID | [TIGR00558] pyridoxamine-phosphate oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.000793587 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.125259 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGCA TTTCCACCTC GATCGCCGAT CTGCGCAAAA GCTACGAGCG CGCGGAACTG
AGCGAATCGG CCTCCCTGGC CGATCCGCTG CAGCAGTTTG ACCAATGGCT GCAGGAAGCC
CTGAGCGCCC AGGTGCCCGA GCCCAATGCC ATGACGCTGG CCACCGTGGG CGGCGACCTG
CGGCCCAGCA CGCGCATCGT GCTCATCAAG GGCTATGACG AGCGCGGCCT GGTCTGGTAC
ACCAACTACG ACAGCCGCAA GGGCCAGCAA CTGGCGGGCA ATCCGTTTGC AGCGCTGCAG
TTCCACTGGG TGGAGCTTGA GCGCGTGGTG CGCATCGAGG GCCGCGTGGA AAAGGTCAGC
GATGCCGAGA GCGACGCCTA CTTCAACAGC CGCCCGCTGG ACTCGCGCAT CGGTGCCTGG
GCCAGTCCGC AAAGCCAGGT CATCAGCGGC CGCAGCGTCC TGGTGGCCAA TGCGGCCAAG
TACGGCGCGC AATTCCTGCT GAACCCGCCG CGCCCTCCGC ACTGGGGTGG ATTCAGGCTG
GTGCCCGAAC GCTGGGAATT CTGGCAAGGC CGCAAGAGCC GGCTGCACGA CCGCCTTTGC
TACCAGCTGG AAGCTGGAAC CTGGCTGCGC CAGCGCCTGG CGCCCTGA
|
|---|
| Protein sequence | MSSISTSIAD LRKSYERAEL SESASLADPL QQFDQWLQEA LSAQVPEPNA MTLATVGGDL
RPSTRIVLIK GYDERGLVWY TNYDSRKGQQ LAGNPFAALQ FHWVELERVV RIEGRVEKVS
DAESDAYFNS RPLDSRIGAW ASPQSQVISG RSVLVANAAK YGAQFLLNPP RPPHWGGFRL
VPERWEFWQG RKSRLHDRLC YQLEAGTWLR QRLAP
|
|---|
| |