| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3918 |
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| Symbol | |
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| ID | 5749501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 4316095 |
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| End bp | 4319211 |
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| Gene Length | 3117 bp |
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| Protein Length | 1038 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641299016 |
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| Product | CzcA family heavy metal efflux protein |
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| Protein accession | YP_001564934 |
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| Protein GI | 160899352 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00256702 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0818754 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGCGC GCCTCATCGA TTTTTCGCTG CGCCAGCGCG CGCTGGTGCT GATGGCCGCC
TGCGCGCTGG CCCTGGCCGG TGCCTGGGCC TATGTGCACC TGCCCATCGA TGCCTTCCCC
GACATCTCGC CCACCCAGGT CAAGGTGATC CTGAAGGTGC CCGGCATGAC GCCCGAGGAG
GTGGAGCAGC GCGTCTCCAC GCCTGTCGAG CAGGAATTGC TGGGCCTGCC GCACAAGACC
ATGGTGCGCT CGGTGTCCAA GTACGGCATC AGCGACGTGA CCGTGGATTT CAGCGAGGGC
ACGGACGTGT ACTGGGCGCG CCAGCAGGTG TCCGAGCGGC TGGCCGGCCT GCAGCGCGAG
CTGCCCGCCA CGGCCGAAGG GGGGCTTGCC CCCATCACCA CGCCGCTGGG CGAGATGTTC
ATGTTCACCA TCGACGGTGA GCAATGGTCT CTGGCCGAGC GCCGCCATGT GCTGGACTGG
GTGATTCGCC CTGCGCTGCG CACCGTGGCC GGGGTGGCCG ACGTGAATGC CCTGGGCGGC
ATGGTGCGCG GCTACGAGGT GATCCCCGAC CCCGCCCGGC TGCGGGCGCG CGGCGTGACG
CTGGACCAGC TGCGCCAGGC GCTGGAGGCC AACAACCGCA ACGACGGCGC AGGCCGGCTG
GACCGCGGGG AAGAGCACTG GGTGGTGCGC GTGGAAGGCG GCGTGCGCGG GCTGGACGAC
CTGCGCGCCA TTGTCGTGGC GCCCGCCCAT GAGGGGCGCG TTGCCGCCAC CGTGGGCGAT
GTGGCCACCG TGCGCCTGGG CGAAGCCACG CGCAACGGCG CCGTCAGCCG CGACGGACGT
GGCGAAGCCG TGCAGGGCCT GGTGCTGGGA CTGCGCGGGG TGGATGCGCG CAGCCTGGTG
GACGCCGTGC AGGCGCGGCT GGACGAACTG GCTCCCCGGC TGCCCAAGGG CATGAGCACC
CAGGTCTTCT ACAACCGGGG CGACCTGGTC TCGCGCGCGG CGGGCACCGT GGTGCGCGCT
CTGGTCGAGG CCAGCGTGCT GGTGCTGGTC ACGCTCTACC TGTTCCTGGG CGGGCTGCGT
GCGGCCCTGG TGGTGGCGGC CACGCTGCCG CTGTCCATGC TGGCCACCTT CCTGCTGATG
CGCCATGCGG GCCTGACGGC CAACCTGATG AGCCTGGGCG GCCTGGCCAT CGCCCTGGGC
ATGCTGGTGG ATGCTGCGGT GGTGGTGGTG GAGAACATAG AGACCGCGCT GGCGAATGAG
TCTGCGGGCG CAACGGCCAT CGAAACGGCA GGCAGCTCCC CGCCGCAGGA CCGGGCCGTG
CTGATCCGCC AGGCGGTCTC GGCGGTCTCC GTGCCCATGT TGGCCGGCGT GTCCATCATC
GCCATCGTGT TCCTGCCGCT GCTCACGCTG CAGGGGCTGG AGGGCAAGCT GTTCGCGCCG
GTGGCGCTGA CCATCGTGCT GGCGCTGGGA GCCTCGGTGC TCATCGCCTT CACCGTGGTG
CCTGCGCTGG CCTCGCTGCT GCTGCGCTCG CATGGCGGCG ATGAACCCTG GCTGATGCGG
CGCGTGGCCC GGGGCTTCGA GCGCATGCAG CGCTGGAGCC TGGCCCACCG GCCTGCGGTC
TTCGGCATTG CCGGGGCATC GCTGGCCGGG GCGGCCGTGC TCTACCTGTC CGTGGGCAAG
ATCTTCATGC CCACCATGGA TGAGGGCGAC ATGATCGTGC AGCTGCAAAA GACGCCCTCC
ATCTCGCTGG CCGCTTCGCT GGACATGGAC GGGCGCGTGC AGCGCGCGCT GCTGGAGCAG
GTGCCCGAGA TCCGCTCCAT CGTCGCGCGC ACGGGCTCGG ACGATCTGGG CCTGGACCCC
ATGGGCCTGA ACGAGACCGA TACCTTCCTG GTGCTGCGCC CGCGCGACGA GTGGCGCGGC
AGCAAGGAAG ACATCGCCGA GGCCATACGC CAAGTCATGC AAGGCTTTCC GGGGCTCATC
TACGGCTTCA CCCAGCCCAT AGAAATGCGC GTCTCCGAAA TGCTGACCGG CACACGCGGC
GACGTGGCCA TCAAGATCTT CGATCCCGAT CTGGCGCGGC TGGACACTGC CGCCCAGGCC
GTGGCCGCGC GCATGCGCGC GGTGGCCGGG GCCTCCGAAG TCATCGCGCC CAGCAACAGC
GGCGTGCAAT ACCTGCAGGT GGCGCTCAAC CGCGCGGCGC TGGGCCAGTC CGGGCTCAGT
GGCGATGGCC TGCAGGCGCA ACTGCGCGCC CTGGTGGAAG GCGAGCGCAT TGGCATCGTG
CCCGAAGGCG TGGCGCGCAC GCCGCTCATC CTGCGCGGCG GGGCGGCGCT GCGCCAGTCG
CCCGAAGGCC TGGCCGGCCT GCTGGTGACG GCGGCGGACG GCAGCAGCTG GCCATTGACC
TCCCTGGCCA CGCTGGTGGC CCGCGACGGC CCCGTGCGCG TGGACCACGA AAACGGCGCA
CGCTTCGCCG TGGTGCAGGT CAACGTCGAA GGGCGCGACC TGGCCAGCTT TGTGCGAGAT
GCCCAGGCGG CCGTCGCCGG TGATGCCGGC CTCAAGGACA TGCGCATCGT CTGGGGCGGC
CAGTTCGAGA ACCAGCAGCG CGCCGCCGCA CGGCTGGCGC TGGTGGTGCC GCTGGCGCTG
GGCGCCATCT TCGTGCTGCT GGTGCTGACC TTCCGCTCGC CCAGACAGGC GCTGCTGGTC
ATTGCCAACA TCCCGTTCGC GCTGGTGGGC GGCATGGCGG CGCTGAGTGC GGCGGGCGAG
TACCTGTCGG TGCCTGCCTC CGTGGGCTTC ATCGCGCTGC TGGGCATTGC GGTGCTCAAC
GGCGTGGTGC TGGTATCGCA CTTCAACAAC CTGCTGGCTG CGGGCCAGCC CCTGTCCCAG
GTGGTGCGGC ACGGCGTGCG CGACCGGCTG CGGCCCGTGC TGATGACGGC CTGCATCACC
GCGCTGGGCA TGGTGCCGCT GCTGCTGGCC AGCGGGCCGG GCTCGGAGAT CCAGCGGCCG
CTGGCCATCG TGGTGGCGGG CGGGCTGGTC AGTTCCACGG CGCTGACCCT GCTTCTGCTG
CCTTTGCTGT TCGAACGCTT CGGCCTGTCG CGGCGTGAGC GGGAGGCCCG GTCATGA
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| Protein sequence | MLARLIDFSL RQRALVLMAA CALALAGAWA YVHLPIDAFP DISPTQVKVI LKVPGMTPEE
VEQRVSTPVE QELLGLPHKT MVRSVSKYGI SDVTVDFSEG TDVYWARQQV SERLAGLQRE
LPATAEGGLA PITTPLGEMF MFTIDGEQWS LAERRHVLDW VIRPALRTVA GVADVNALGG
MVRGYEVIPD PARLRARGVT LDQLRQALEA NNRNDGAGRL DRGEEHWVVR VEGGVRGLDD
LRAIVVAPAH EGRVAATVGD VATVRLGEAT RNGAVSRDGR GEAVQGLVLG LRGVDARSLV
DAVQARLDEL APRLPKGMST QVFYNRGDLV SRAAGTVVRA LVEASVLVLV TLYLFLGGLR
AALVVAATLP LSMLATFLLM RHAGLTANLM SLGGLAIALG MLVDAAVVVV ENIETALANE
SAGATAIETA GSSPPQDRAV LIRQAVSAVS VPMLAGVSII AIVFLPLLTL QGLEGKLFAP
VALTIVLALG ASVLIAFTVV PALASLLLRS HGGDEPWLMR RVARGFERMQ RWSLAHRPAV
FGIAGASLAG AAVLYLSVGK IFMPTMDEGD MIVQLQKTPS ISLAASLDMD GRVQRALLEQ
VPEIRSIVAR TGSDDLGLDP MGLNETDTFL VLRPRDEWRG SKEDIAEAIR QVMQGFPGLI
YGFTQPIEMR VSEMLTGTRG DVAIKIFDPD LARLDTAAQA VAARMRAVAG ASEVIAPSNS
GVQYLQVALN RAALGQSGLS GDGLQAQLRA LVEGERIGIV PEGVARTPLI LRGGAALRQS
PEGLAGLLVT AADGSSWPLT SLATLVARDG PVRVDHENGA RFAVVQVNVE GRDLASFVRD
AQAAVAGDAG LKDMRIVWGG QFENQQRAAA RLALVVPLAL GAIFVLLVLT FRSPRQALLV
IANIPFALVG GMAALSAAGE YLSVPASVGF IALLGIAVLN GVVLVSHFNN LLAAGQPLSQ
VVRHGVRDRL RPVLMTACIT ALGMVPLLLA SGPGSEIQRP LAIVVAGGLV SSTALTLLLL
PLLFERFGLS RREREARS
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