| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3917 |
|---|
| Symbol | |
|---|
| ID | 5749500 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 4314728 |
|---|
| End bp | 4316098 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641299015 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001564933 |
|---|
| Protein GI | 160899351 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0283416 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0680244 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCA CCCACACCAC CACCCACACC ACCACCTCCT CCCCCCACTG CAGGGCGCAA
GGCCTTGCCG GACTCTCTTT CAGGAACATG CCCATGAAAC CCCTGCTGCA TGCCTGGGCC
GCTGCCTTGC TGTGTGCCTG CGCTGTCCAG GCCCAGGCCC AAAGCCATCT GCCGCCCGAG
GCCGCCGTGC GCGAAGCCGT GGCCCGCTCT CCTGTCGTGC AGGCTGCCGA CGCCGCGCAA
CGCGGCGCTG CGGCGCGCGC CCAGGCCCTG CGCGCCGGCC CGCATGAAAC CGTGGTGCGT
GCCAGCGGCC AGCGCCGCTG GGTGCACGAC GGCTCGGGCC AGCGCTTTGC CGAAGGGCAG
ATCGCCATCG AGCGCCCGCT GCGCCTGGGC GGCAAGGCCG AATCCGATGC GCAGCTTGCC
GAAGCGACCC AGGCCGCATC GCGCGTGGCG GCCCAGGATG TGCGGCACGA AGCCGCACGC
CAGTTGCTGG CGCTGTGGTT TGCCGCACAG CGCGCAGGCC AGGCCCAGCA GACCGCCCGG
GACAATGCCG ACGCTGCCGC CGAACTGGCC CGCGTCACCG AACGCCGGCT GCGCGCAGGC
GATGCCGCCA GGCTGGACGC CGAACTGGCC GCAGCCGAGC ACGCGCGCAT GCAGGCCGCG
CTGGCAACGG CCCAGGCCGC GCACCAGGCG GCCCAGGCCG ACCTGCAGGC GCGCTTTCCG
GGCCTGGAGG CTGCCCGGGC GAAGGAGGGG GAGGCTGCGC CACCGCTGCT GGATCTGCCA
CCGCTGCCCG ATCTGCCACC GCTGCCGCAG CAGTCACCGG CCCAGCTGCG CCTGCGCTAC
ATAGAGCACA GCCACGAATA CCTGCTGGCC CAGGCCGAGG AAACCCTGGC CCTGCGCCAG
GCCCGCCGTG CCGATCTGGA GCGCCGGCCC GACCCCACCG TGGGCGTGTT CGCCACCAGT
GAGCGAGGGG GCAGCGAGCG CATCGCAGGC GTCAGTCTGT CCGTGCCCCT GGGCTCGGTG
CACCGCCAGG CCCAGGCCGA CCAGGCCCTG GCCGATGCCG ACGCCGCGCT GTCCCGTCGC
CTGGCGGCCG AGCGCCGCCT GGGCGCGGAG TTCGACGTTC TCTGGAGCCT GCTGGCCGGC
AAGCGTGCCG CCGCCCAGGC CCAGGCCCGC GCCGCCACGC TGCAGCAGGG CGCCGCCGAC
CGCGCACTGC GCGCCTACCG TGCCGGTGAA TCGGGCCTGA CCGAACTGCT GGCCGTGCGC
CGCACCCTGG CCGAAGCGCT GCTGGCCGAA CGCCTGGCCC GCAGCGAGGC GCTGGAGGGC
GATAGCCGCC TGCGGCTGGA TCTGCATGAG CTGTGGGATT TTGATGACTG A
|
|---|
| Protein sequence | MSTTHTTTHT TTSSPHCRAQ GLAGLSFRNM PMKPLLHAWA AALLCACAVQ AQAQSHLPPE
AAVREAVARS PVVQAADAAQ RGAAARAQAL RAGPHETVVR ASGQRRWVHD GSGQRFAEGQ
IAIERPLRLG GKAESDAQLA EATQAASRVA AQDVRHEAAR QLLALWFAAQ RAGQAQQTAR
DNADAAAELA RVTERRLRAG DAARLDAELA AAEHARMQAA LATAQAAHQA AQADLQARFP
GLEAARAKEG EAAPPLLDLP PLPDLPPLPQ QSPAQLRLRY IEHSHEYLLA QAEETLALRQ
ARRADLERRP DPTVGVFATS ERGGSERIAG VSLSVPLGSV HRQAQADQAL ADADAALSRR
LAAERRLGAE FDVLWSLLAG KRAAAQAQAR AATLQQGAAD RALRAYRAGE SGLTELLAVR
RTLAEALLAE RLARSEALEG DSRLRLDLHE LWDFDD
|
|---|
| |