| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3912 |
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| Symbol | |
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| ID | 5749495 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 4306815 |
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| End bp | 4308542 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641299010 |
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| Product | dihydroxy-acid dehydratase |
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| Protein accession | YP_001564928 |
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| Protein GI | 160899346 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0000220619 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0467724 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACGTT CCCCCGAATC CCTGCGCAGC GCACGCTGGT TTGCTCCCGA TGATTTCCGC
TCCTTCGGCC ACCGCTCGCG CGTGCTGCAG ATGGGCTATG GCTACGAGGA CTGGATGGGC
AAGCCCGTGA TCGCCATCGT CAACACCTGG AGCGATGCCA ACCAATGCCA TGCCCACTTC
AGGCAGCGCG TGGAAGACGT CAAGCGCGGC GTGCTGCAGG CGGGCGGCTT TCCGCTGGAG
CTGCCAGCCA TCTCGCTGTC GGAAAGCATG GTCAAGCCCA CGACCATGGT CTATCGCAAC
TTCCTGGCCA TGGAGACGGA GGAGCTGCTG CGCAGCCACC CGGTGGATGG CGCCGTGCTC
ATGGGCGGCT GCGACAAGAC CACGCCGGGG CTGACCATGG GGGCGATCTC CATGGGCCTT
CCCTTCATCT ACCTGCCGGC CGGCCCCATG CTGCGCGGCA ACTGGAAGGG GCAGGTGCTG
GGCTCGGGCT CGGACGCCTT CAAGTTCTGG GACGAACGCC GCGCCGGCCG GCTGGATGAG
CAGGCCTGGC GCGAGATGGA AGCCGGCATT GCCCGCAGCC ACGGCACCTG CATGACCATG
GGCACGGCGG CCACCATGAT GGGCATTGCC GAGGCCGTGG GCCTGGCGCT GCCGGGCGCT
TCGTCCATTC CGGCCGCCGA CGCCAACCAC ATCCGCATGA GCACCGACTG CGGCCGCCGC
ATCGTGCAGA TGGTGTGGGA AGACCTCACG CCCGCCCGCA TGCTCACGCG TGCGCATTTC
GAGAACGGCA TTGCCTGCGC CATGGCCATG GGCTGCTCCA CCAACGCCAT CATTCACCTG
ATCGCCATGT CGCGGCGCGC GGGCCATCCG GTCAGCCTCG ATGACTTCGA CGCCTTCAGC
CGCCGCGTGC CCGTGATCGC CAACATCCGG CCCAGCGGCG ACCGCTATCT GATGGAGGAC
TTCTTCTATG CAGGCGGCCT GCGCGCCCTG CTGGAACGTA TCCGCCCGCA TCTGGACACC
GGGGCCATGA CGGTCAACGG CAAGACCCTG GGCGAGAACA TTGCGGGCAG CCAGGTCCAC
CAGGACGACG TGATCCGCCC CCTGTCCCGC CCCATCTACG CCGAAGGGGC GCTGGCCGTG
CTGCGCGGCA ACCTGGCGCC GGACGGCGTG GTCATCAAGC CCAGCGCCTG CGCCCCGCAC
CTGCTGCGCC ATACGGGGCG CGCCCTGGTG TTCGACGACT ACCCCAGCCT CAAGCAGGCC
GTGGACGACC CCCATCTCGA TGTGAACGGC GAAGACATCC TGGTGCTGCG CAACGCCGGC
CCCAAGGGCG CGGGCATGCC CGAATGGGGC ATGCTGCCCA TTCCCACCAG GCTGCTGAAG
CAAGGCGTGA AAGACATGCT GCGCCTGTCC GACGCCCGCA TGAGCGGCAC CAGCTACGGC
GGCTGCCTGC TGCATTGCTC ACCCGAATCC GCCGTGGGCG GGCCGCTGGC CCTGGTGCGC
ACGGGCGACC GCATCACGGT GGACGTGCCC GCCCGCCGCA TCCACCTGGA AGTCAGCGAC
TCAGAACTCG CCACCCGCCG CGCCGCATGG ACGCCCCCGC CCGCGCGCTA CGAGCGCGGC
TATGGCTGGC TGTTCGGCCG CCATATCCTG CAGGCCAATG AGGGATGCGA TTTTGATTTT
CTGGAGACGG GCTTTGGGCG GGCTGTGCCG GAGCCGGATA TTTTTTGA
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| Protein sequence | MTRSPESLRS ARWFAPDDFR SFGHRSRVLQ MGYGYEDWMG KPVIAIVNTW SDANQCHAHF
RQRVEDVKRG VLQAGGFPLE LPAISLSESM VKPTTMVYRN FLAMETEELL RSHPVDGAVL
MGGCDKTTPG LTMGAISMGL PFIYLPAGPM LRGNWKGQVL GSGSDAFKFW DERRAGRLDE
QAWREMEAGI ARSHGTCMTM GTAATMMGIA EAVGLALPGA SSIPAADANH IRMSTDCGRR
IVQMVWEDLT PARMLTRAHF ENGIACAMAM GCSTNAIIHL IAMSRRAGHP VSLDDFDAFS
RRVPVIANIR PSGDRYLMED FFYAGGLRAL LERIRPHLDT GAMTVNGKTL GENIAGSQVH
QDDVIRPLSR PIYAEGALAV LRGNLAPDGV VIKPSACAPH LLRHTGRALV FDDYPSLKQA
VDDPHLDVNG EDILVLRNAG PKGAGMPEWG MLPIPTRLLK QGVKDMLRLS DARMSGTSYG
GCLLHCSPES AVGGPLALVR TGDRITVDVP ARRIHLEVSD SELATRRAAW TPPPARYERG
YGWLFGRHIL QANEGCDFDF LETGFGRAVP EPDIF
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