Gene Daci_3888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3888 
Symbol 
ID5749471 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp4282313 
End bp4282894 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content65% 
IMG OID641298986 
ProductTetR family transcriptional regulator 
Protein accessionYP_001564904 
Protein GI160899322 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.0944552 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.0941974 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAAC CCGCACAGGA AACACGCCAG CACATCCTTG ATGTGGCCAA GGCGTTGATG 
ACCCAGAAAG GCTACACGGC CGTCGGCCTG GCCGAGGTCG TCGCGGCTGC GGGCGTGCCC
AAGGGCTCCT TCTACTACTA CTTCAAGTCC AAGGAAGAGT TCGGCCAGGC CCTGCTGCAG
GAGTACTTCG ACGAGTACCT GGCCAAGATC GATGCGCTCA TGGAGACGCC CGATCCGGCC
ATCTCCCGGC TGATGACCTA CTTCCGCCAT TGGACGCAGA ACCAGTGCTC GGCCCATGCA
GGAGGCCAGT GCCTCGTGGT CAAGCTGGGC CCCGAGGTCT GCGACCTGTC CGACGACATG
CGCTCGGTGC TGCGCACCGG CACCGACGCC ATCATCACCC GGCTGACCGA CTGCGTGCGC
GCCGGCCAGG CCGATGGCTC CATCACATCC GACCTGGACG CGCCTGCGCT GGCCGAATCG
CTGTACCAGC TGTGGCTGGG CGCCTCCCTG CTGTCCAAGC TGGGCCGGCA TGAGGAGCCA
TTTGCCGCAG CCCTTGTGTC CACGAAGCGG CTGCTGGGCT GA
 
Protein sequence
MKKPAQETRQ HILDVAKALM TQKGYTAVGL AEVVAAAGVP KGSFYYYFKS KEEFGQALLQ 
EYFDEYLAKI DALMETPDPA ISRLMTYFRH WTQNQCSAHA GGQCLVVKLG PEVCDLSDDM
RSVLRTGTDA IITRLTDCVR AGQADGSITS DLDAPALAES LYQLWLGASL LSKLGRHEEP
FAAALVSTKR LLG