| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3868 |
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| Symbol | |
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| ID | 5749451 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 4263992 |
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| End bp | 4266184 |
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| Gene Length | 2193 bp |
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| Protein Length | 730 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641298966 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001564884 |
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| Protein GI | 160899302 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0373872 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACGCA GAGTCACCAT CAACACTCCC CTGGCAGACC AGCTGCAGCT GCGCCGGCTG
CAGGGTCGCG AGGAAATCAG CCATCTGTTC GCCCTGGAGA TCGACCTGCT CAGCGAAAGC
GACAGCATCG ATCCCAAGGC CCTGCTGGGC AAGGGCGCCA CCGTGGTGGT GGAGACCCAG
GACGGCGGCA AACGCTACAT CGATGGCCTG GTCACGGCCT TCGGCATGCG CGGCCAGGAC
GAGCACCGCA ACTTCCTGTA CCGCGCGCGC CTGTCGCCCT GGCTGTGGCT GGCCACGCGC
CGCAGCGACT TTCGCATCTT CCAGAACAAG ACCGTGCCGG ACATCATCAA CGAGGTCCTG
GGCATCTACG GCCACCCCAT GCAGCAGCGC CTGACGCGCT CCTACCGCAC CTGGGAGTAC
TGCGTGCAGT ACAACGAGAC GGACTTCCAG TTCGTCTCGC GCCTCATGGA GCACGAGGGC
ATCTGCTACT ACCACCAGCA CAGCGCGGGC CAGCACGTGC TGACATTGGG CGACGACATC
GTCGCCTCGC ACGACCCGCT GCAGGGCGGC GCCGTCATCC CCTTCCACCC GCCGGGCAAG
GCAGCCGTGG CGCGCGAGGA ATGCATACAC GCCTGGGAAC TGCACCAGCG CGTCAAGCCC
GGCCGGCACT ACAACGACGA CTACGACTTC AAGAAGCCCC GCGCCGAGCT GTCCAACATG
CGCCGCAACC CGCCCGGCCA TGCGCACGAC GCCTACGAGA TCTACGAATG GCCGGGCGGC
TACACCGAAA CCGGCGACGG CGAGGACTAC ATCCGCGTGC GCCTGCAGCA AAGCCTCACG
CGCCAGAGCA CGGTGCAGGG CAGCTCCAAC CACCGCGCCA TGGCGCCGGG CTACACCTTC
ACGCTGGACA ACTACCCGCG CGGCGACCAG AACCAGGCCT ACCTGGTCAC GGCCGTGGAC
TACGCCTTCG AAGAAAACCC GCGCGTCAGC GACGGCGGCA GCGGCGAGGG CTCGACACAG
AAATTCGTGC TCCAGGCCCA GCCCACCAGC CTGCCCTTCA AGCCCCAGCG CATTACCGCC
AAACCACGCA CCACGGGCCC GCAGACCGCC GTCGTCGTGG GCCCCGCAGG CGAAGAGATC
TGGTGCGACC AGTACGGCCG CGTCAAGGTG CAGTTCCACT GGGACCGCAT CGGCGGCATG
AACGAGAACT CCAGCTGCTG GATGCGCGTG GCCACCAGCT GGGCCGGGCC GGGCTTTGGC
GCGGTGCACA TCCCGCGCAT CGGCATGGAA GTCATCGTGG ACTTCCTCAA CGGCGACCCG
GACTACCCCA TCGTCATGGG CTGCGTCTAC AACGCCTCCA ACATGCCGCC CTGGGCGCTG
CCGGCCAACG CCACGCAATC GGGCATCAAG ACCAGATCCA GCAAGGGCGG CGCACCGGGC
GCGGGCATGA AGAACGGCCA GGGCGACGCC AACGCCATCC GCTTCGAGGA CAAGGCGGGC
GCCGAACAGC TGTGGCTGCA TGCGCAAAAG GACCAGCTCA CCGAAGTCGA GAACGACGAG
GACAAATGGG TGGGCAACGA CCGGCGCAAG ACCATCGACC GGGATGAAAC TAACGTCATC
CACCGCGACC GCACGGAGAC CGTGGACCGC GACGAAACCA TCACCGTGCA CAACAACCGC
ACGGAGCGGG TGGACCACAA CGAGAAGATC AGCATCGGCG ACAACCGCAA CGAAGACGTT
GGCATCGACG AGAACATCTC CATCGGCAAG AACCGCAGCA AGACCATAGG CCGCAACGAG
AAGGACAAGA TCGGCAACAA CTGGTCGATC AAGGTGGGCA GCTTCAAGAC AGAGACCATC
GGACTGGCCT ACATGCAGAA CGTGGGCCTG GCCAAGATGG TGAACATCGG CGCCGCCTAC
AACGTCAATG TGGGCGCGGC CATGGTGGTG AATGTGGGGC TGAGCCAGAG CACGACGGTG
CTGGTGGACC GTTCCGTCAG GGTCCAGGGC AACCAGCAGA CCACGGTAGG AAAGCGCTAC
GCCATTCAGG CCGGCGACGA GCTCTTAATC ACCGTGGGCG CTGCCAGCTT GGTAATGAAA
AGCGACGGCA CGATCACCAT CAATGGCAAG AACATCGACG TGGTCGGCAG CAAGCACATC
GGCCTCGACT CCAAGCGTAT TGACCTGAAC TGA
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| Protein sequence | MTRRVTINTP LADQLQLRRL QGREEISHLF ALEIDLLSES DSIDPKALLG KGATVVVETQ
DGGKRYIDGL VTAFGMRGQD EHRNFLYRAR LSPWLWLATR RSDFRIFQNK TVPDIINEVL
GIYGHPMQQR LTRSYRTWEY CVQYNETDFQ FVSRLMEHEG ICYYHQHSAG QHVLTLGDDI
VASHDPLQGG AVIPFHPPGK AAVAREECIH AWELHQRVKP GRHYNDDYDF KKPRAELSNM
RRNPPGHAHD AYEIYEWPGG YTETGDGEDY IRVRLQQSLT RQSTVQGSSN HRAMAPGYTF
TLDNYPRGDQ NQAYLVTAVD YAFEENPRVS DGGSGEGSTQ KFVLQAQPTS LPFKPQRITA
KPRTTGPQTA VVVGPAGEEI WCDQYGRVKV QFHWDRIGGM NENSSCWMRV ATSWAGPGFG
AVHIPRIGME VIVDFLNGDP DYPIVMGCVY NASNMPPWAL PANATQSGIK TRSSKGGAPG
AGMKNGQGDA NAIRFEDKAG AEQLWLHAQK DQLTEVENDE DKWVGNDRRK TIDRDETNVI
HRDRTETVDR DETITVHNNR TERVDHNEKI SIGDNRNEDV GIDENISIGK NRSKTIGRNE
KDKIGNNWSI KVGSFKTETI GLAYMQNVGL AKMVNIGAAY NVNVGAAMVV NVGLSQSTTV
LVDRSVRVQG NQQTTVGKRY AIQAGDELLI TVGAASLVMK SDGTITINGK NIDVVGSKHI
GLDSKRIDLN
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