| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3859 |
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| Symbol | |
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| ID | 5749442 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 4251501 |
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| End bp | 4253375 |
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| Gene Length | 1875 bp |
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| Protein Length | 624 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641298957 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001564875 |
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| Protein GI | 160899293 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.353527 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCCC GCCTCGTCGA GTACTACAAC CGCGAACTGG CCTATCTGCG CGAGCTGGGC
GCCGAGTTCG CCGCCGCCTT CCCCAAGGTG GCGGGCCGCC TTTCCCTGCA CGACACCGAT
GTGGCCGACC CCTATGTGGA GCGCCTGCTG GAAGGCTTCA GCTTTCTGAG CGCGCGCATC
CAGCTGAAGA TGGATGCGGA GTTTCCGCGC CTGTCCCAGC GCATGATGGA GATGGTCTGC
CCCCACTACC TGGCGCCCAC GCCATCCATG GTGGTGGTCC AGCTCAAGCC CAGCGCCAAG
GAAGGCAACC TCGTGGACGG CTTCACCCTG CCCTCTGGCA GCGTGCTGCG CACCCACAAG
TCACAGGAAG AGCAGACCAT CTGCGAATTC CGCACCGGCG GGCCGCTGAC GCTGTGGCCG
CTGGAGATAC GCCAGGCGCG CCTGGGCGGC CCGGCGCTGG ACCTGCCCCA TGCCCTGGTA
CCCCAGCTGG GCGAGGCCGG CGGCCACCTG CGCCTGCAGC TGGCCACGCT GGACGCCTCG
CAGTGCATGC AGCTGGCGAT GGACCAGCTG TGGGTCTACA TCCATGCGGG CGATGTCGTC
GCCTCCCACC TGCAGGAACT CATCCACACG CAGACGCTGG CCATCGTTGT CCACCACCCG
CAGGACCCGC GCCAGGTCTG GGACGTGCTG CAGCCCGATG CACTGCGCGC CGAAGGCCAT
GACAGCGAGC AGGCGCTGAT TCCCTATTCG CACCGCGCCT TCCAGGGCCA CCGTCTGCTG
CACGAGTACT TTGCGTTTCC CGCACGGCAG CGGTTCTTCT CGATCAACGG CCTGTCGCGC
AGCATGCGCC GCATTGCCCA TGACGGCGTG GGCATCACCG TGCTGCTGCG CCGCGCCGCG
CCCACGCTGG AGCCGCAGAT CGACGCGGCC AAGCTGCTGA TGCACTGCAT TCCGGCCATC
AACCTGTTCG AGTACACGGC GGACCGCCTG CATGTGGCCT CCAACGTGCA CGAGTACCAC
GTCATTCCCG ACCGCACGCG GCCGCTGGAC TTCGAGGTCT ACGGCGTGCA GGCCGTCACC
GGCCACCACG AAGGCAAGAC CCAGGACCGC GAATTCGCGC CGCTGTACGC ATCCACGCAC
GGCCTGCACT CCACCGAGCA GGCCTACTTC ACCACGCGGC GCGAGCCCCG GCTGTTTTCC
GAGCGCAGCC TGCGCAGCGG CCCGCGCACG CAGTACCTGG GCTCGGAAGT CTTCATCTCC
CTGGTGGACC AGCGCGAGGC CCCGTTCTCC GACGACCTCA AGCAGCTGTC CATGCACACC
CTGTGCACCA ACCGCGACCT GCCCCTGCTC ATGCGCGTCA ACCAGCCGGG CGGCGACTTT
GCGCTGCAGG AATCGGCGCC CGTGGAATGG GCCCGCGCCA TCGCCGGCCC CAGCGCGCCC
ATCCCCGCCG TGGCCGACGG AGGCCTGACC TGGCGATTGA TCTCCCACCT GAGCCTGAAC
TACCTGGCCA TGACCGATCT GTCCGACGAG GAAGGCGCGG CCACGCTGCA GGAGCTGCTG
CGCCTGTACC TGGACCTGGG CAACCACCAG CTGGCCGGGC AGATCGCCGC CATCCAGGGC
ATGCGCATCG AACCCATCAC GCGCCGCCTG CCCCAGCACC GCCAGCTGGT CTACGGCCGC
GGCGTGGGCG TACACCTGAG CGTGGACGAG CCGGCCATGG CTGGCGTCAG CCCCTGGCCC
CTGTCCAATG TGCTGGAGCG ATTCTTCGCC CGCCATGTGG GCGTCAACAG CTTCACCGAG
CTGCAGCTGC ACTCGCGCCA GCGCGGTCCC GTCGCGCGCT GGACTCCGCG CCCCGGACAA
AGGCCCGGCA TATGA
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| Protein sequence | MNPRLVEYYN RELAYLRELG AEFAAAFPKV AGRLSLHDTD VADPYVERLL EGFSFLSARI
QLKMDAEFPR LSQRMMEMVC PHYLAPTPSM VVVQLKPSAK EGNLVDGFTL PSGSVLRTHK
SQEEQTICEF RTGGPLTLWP LEIRQARLGG PALDLPHALV PQLGEAGGHL RLQLATLDAS
QCMQLAMDQL WVYIHAGDVV ASHLQELIHT QTLAIVVHHP QDPRQVWDVL QPDALRAEGH
DSEQALIPYS HRAFQGHRLL HEYFAFPARQ RFFSINGLSR SMRRIAHDGV GITVLLRRAA
PTLEPQIDAA KLLMHCIPAI NLFEYTADRL HVASNVHEYH VIPDRTRPLD FEVYGVQAVT
GHHEGKTQDR EFAPLYASTH GLHSTEQAYF TTRREPRLFS ERSLRSGPRT QYLGSEVFIS
LVDQREAPFS DDLKQLSMHT LCTNRDLPLL MRVNQPGGDF ALQESAPVEW ARAIAGPSAP
IPAVADGGLT WRLISHLSLN YLAMTDLSDE EGAATLQELL RLYLDLGNHQ LAGQIAAIQG
MRIEPITRRL PQHRQLVYGR GVGVHLSVDE PAMAGVSPWP LSNVLERFFA RHVGVNSFTE
LQLHSRQRGP VARWTPRPGQ RPGI
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