Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_3846 |
Symbol | |
ID | 5749429 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 4239050 |
End bp | 4242706 |
Gene Length | 3657 bp |
Protein Length | 1218 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641298944 |
Product | type VI secretion protein IcmF |
Protein accession | YP_001564862 |
Protein GI | 160899280 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0318709 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCGTC GCATCGCCTC ATGGCTGTTC AACCGCTACA TGCTGGAGCT TCTGGGCCTG GTGGCCCTGA GCCTGCTCAT CTGGTTCGTC GGCCCGCTCG TCTTCATCCA GCCCTACCAG CCGCTGGGCA GCCCCACCGT GCGCTGGTGG ATCATCGCCG GCCTGTTCAT CCTCTGGTTC CTGCGCCTGC TGCTGCGCTG GTGGCGCGCA CAGCGCATGA ACGAGCACCT CATGACCGGC CTGGCCCGCT TGACCTCGCC GCGCGAGGCG GACGGCACGC CCGCAGCAGG CTCCGAGGAA GTGGCCGAGC TGGAGTCGCG CTTCAAGGAA GCCCTGGACA CGCTGAGCAA GACCCGCTTC GGCCAGACCG AAGGCGGCCT GTTCGGCCGC TGGAACAAGC GCTACATCTA CCAGCTGCCC TGGTACCTGA TCATCGGCTC GCCGGGCTCG GGCAAGACCA CGGCCCTGAT CAACTCGGGG CTGGACTTCC CGCTGGCGGC CCAGTTCGGC AAGCGCGCCA TCCCCGGCAT AGGCGGCACG CGCAACTGCG ACTGGTGGTT CACCGACCAG GCCGTGCTGC TGGACACGGC CGGCCGCTAC ACCACCCAGG AAAGCGATGC GGAGCAGGAC AAGGCAGCCT GGAAGGGCTT CATGCAGCTG CTCAAGCGCT TTCGCGGACG CCAGCCCGTC AACGGCGTGA TCGTCACGCT CAGCGTGCAG GAACTGCTCA GTGCCAGCGA CGCCGAGCGC GCCCAGCTGG CCCAGCTGAT CGGCCTGCGC CTGAGCGAGC TGTGCGAGGA GCTGACCATC CGCTTCCCCG TCTACGTGCT GGTCACCAAG AGCGACCTGC TGGCGGGCTT CAACGAGTTC TTCGGGGCCA TGAGCCGCGA GGAGCGCGCC CAGGTCTGGG GCTTCACCTA TCCCTATGAC GAAAAGACCC AGCGCTCGCC CGCCAGCGAC CCGCAGGCCG CCAGCGCCCT GTACATGGAG GAGTTCGACG CACTGGTCGC CCAGATCAAC CGCCTGCTGC CCCAGCGGCT GATGACCGAG CCCGACCTTG CGCGCCGCAG CCTGCTCTAC GCACTGCCCC AGCAGTTTGC CGGCCTCAAG GACGTGGTGC GCGACACGCT GGATGCGGCG TTCTCCGCCT CGCGCTTCAA GGAAAAACCG TTGCTGCGCG GCGTCTACTT CACCAGCGGC ACGCAGGAGG GCATGCCCTT CGACCGCGTG ATGTCGGCCC TGTCGCGCCG CTTTGCGCTG CGTGGCCGCC TGCCGGCCGA TGCCGTGCCG CAGCAGGGCC GCAGCTACTT CCTGGAGTCG CTGTTCAAGG ACGTGATGTT CAACGAGTCC GGCCTGACCG GGCGCAACGC CAAGAAAGAG CGCCAGCTGC GCCTGATGCA GGCCGCCGGC CTGTGCGCGC TGCTGCTGGC CCTGGGCGGC GCGGCCCTGG CCTGGACGCT GAGCTACGAG AACAACCAGC GCTACCTGAA CGAAGTGGCC GACAACGCCG GCACGCTGCG CCAGGCCGTG GAGGAATCCA AGGCCACCGA TCCCGACAAC GTGGTCGCCC TGGTGCCCAT GCTCAATCAC GCGGCGCGCG TGGCGCAGAG CAGCCGCTTC GAGGAATCGG CCCCGCTGGG CTGGCGCTGG GGCCTGCTGC AGGTGCCCAA GGTGCAGACG GCCGCCCACG CCACCTACCT GCGCCTGCTG GAAGATGCCT GGCTGCCGCG CCTGAGCAGC CATGTCGCGC GCTCGCTGCG CCAGGTCAGC ACCGGCAGCC CCGAGGCCAG CTACGAAACG CTCAAGGCCT ATCTCATGCT CTACGAGCCC GACCACTTCG ACGCCACCTT CGTCAAGGCC TGGCTGCGCA GCGACTGGGA AAACACCCTG CCCCAGCATC TGGTGCAGGC TGGCCTGGTG GACCAGCTGT CCGAGCACCT GGACCGCCTC ATCGACGGCC GCGTGGTGGT CTCCGCCCAG CCCATCGACG CCAACCTGGT CGCCGAAGTG CGCCAGCGCC TGGCCCAGAT GTCGCCCGCC CAGCGCGCCT ACAGCCGCCT CAAGCAGCTG CTGAACACCG GCGACAAGCT GCCGCCCGAC TTCAGCGTGG TGCGTGCCAG CGGGCCCGAG GCGCCCCAGG TCTTTGCGCG TGCCAGCGGC AAGCCGCTCA CCCAGGGCAT CAGCGGCCTG TTCACCTATG ACGGCTACCA CGGCCTCTTC CTGCACGAGC TGCCCAAGGT CACCACCTTG CTGGCCAAGG AGGAAACCTG GGTGCTGGGC CAGGCCGAAG GCCGGCGCAG CGTGGCCCAG GAAGTGCTCA CGGGCCAGCT GGCCAACGAG GTCAAGCGCC TGTACCTCAT GGAGTACGCG CGCCTGTGGG AAACCTTCCT GGCCGACATC CGACCCATAC GCACGGCCTC GCTGGAGCAG GCCGGCGAGC AGGCCCGCCT GTACTCGTCC GCCAACTCCA GCCTGGAGCA GTTCATCCGC GCCGTGGCAC GCGAGACCAC GCTGGCCCGC CGCCCGGACC AGCAGGAAGG CGGCGGCTCG GGCAGCACCA GCAGCTGGCT GGGCGAGAAG CTGCAGCGCA TCCGCGAGGA ACAGCACCAG CTCAGCCGCC TGACCGGCAA GCCGCTGAAC GTGGGCGGCA TGCTGGCCAC CGGCACGCTG GAGGCCGACA TCGTGGACTT CCGCTTCCGC GAATACCGGC GCCTTGCCAC CAGCAACGGC TCGGGCCCGG CGCCCATCAC CGCCAGCCTG CAGGTGCTCA ACGAGGCGGC GGCCGTCATC GCCTCGGCGC GCCAGCAGGT GATCCAGGGC GGCGGCGTGC CTCCCTCGCT GAGCGGCACG CTGGAGAAGG TGCGCTCGGA AGCCAAGCGC GTGCCGCCTC CGCTCAACAG CATGTACGAG GCCCTGGCCA CGTCCACCTC GTCCTTCGTG GGAAGCAGCG TGCGCAGCAC GCTGGGCGGC AACCTCAACG CCACCATCGG CGACTTCTGC CGCCGGGCCA TCCTGGGCCG CTACCCCTTC ACGCGCAGCG CCACGCGCGA CGTGACCACG GACGACTTCG CCCGCCTGTT CGCCACCGGC GGCACCATGG ACGAGTTCTT CCGCACCCAG CTGCAGACCA TGGTGGACAT CTCCACCGTG CCCTGGACCT TCAAGCAGGG TGTGGACGGC ACGCCGGTGG GGGGCTCTGC CTCGCTGGCC GCCTTCCAGC GCGCGGCCTC CATCCGCGAC GTGTTCTTCC GCGCAGGCGG CAACACGCCC GGCATCCGGC TGGAGATCAA GCCGCTGGAC ATGGACGCCT CCATCTCCCA GATGGTGCTG GACGTGGACG GCGAAATCGT GCGCTACCAG CACGGCCCGC AAATCCCCAA GGCCGTCTCC TGGCCGGGCA CGCGCGGCAC CGGCCAGGCC CGGCTGCAGA TCACGGCCGC CGGCGCCCAG AACACCGGCA TCGTGACCGA AGGCCCCTGG GCGCTGCACC GCCTGTTCGA CCGTGCCCAG ATCCTGCCGG GCAACTCGCC CGAGCGTTTC ACGGCCATCT TCACCATCGA CGGACGCAAG CTGCGCATGG AAGTCACCAC CAGCAGCGTC CTCAACCCAT TCCGGCTCAA GGCCATGGAG GAATTCGAAT GTCCGGACCG GCTGTGA
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Protein sequence | MIRRIASWLF NRYMLELLGL VALSLLIWFV GPLVFIQPYQ PLGSPTVRWW IIAGLFILWF LRLLLRWWRA QRMNEHLMTG LARLTSPREA DGTPAAGSEE VAELESRFKE ALDTLSKTRF GQTEGGLFGR WNKRYIYQLP WYLIIGSPGS GKTTALINSG LDFPLAAQFG KRAIPGIGGT RNCDWWFTDQ AVLLDTAGRY TTQESDAEQD KAAWKGFMQL LKRFRGRQPV NGVIVTLSVQ ELLSASDAER AQLAQLIGLR LSELCEELTI RFPVYVLVTK SDLLAGFNEF FGAMSREERA QVWGFTYPYD EKTQRSPASD PQAASALYME EFDALVAQIN RLLPQRLMTE PDLARRSLLY ALPQQFAGLK DVVRDTLDAA FSASRFKEKP LLRGVYFTSG TQEGMPFDRV MSALSRRFAL RGRLPADAVP QQGRSYFLES LFKDVMFNES GLTGRNAKKE RQLRLMQAAG LCALLLALGG AALAWTLSYE NNQRYLNEVA DNAGTLRQAV EESKATDPDN VVALVPMLNH AARVAQSSRF EESAPLGWRW GLLQVPKVQT AAHATYLRLL EDAWLPRLSS HVARSLRQVS TGSPEASYET LKAYLMLYEP DHFDATFVKA WLRSDWENTL PQHLVQAGLV DQLSEHLDRL IDGRVVVSAQ PIDANLVAEV RQRLAQMSPA QRAYSRLKQL LNTGDKLPPD FSVVRASGPE APQVFARASG KPLTQGISGL FTYDGYHGLF LHELPKVTTL LAKEETWVLG QAEGRRSVAQ EVLTGQLANE VKRLYLMEYA RLWETFLADI RPIRTASLEQ AGEQARLYSS ANSSLEQFIR AVARETTLAR RPDQQEGGGS GSTSSWLGEK LQRIREEQHQ LSRLTGKPLN VGGMLATGTL EADIVDFRFR EYRRLATSNG SGPAPITASL QVLNEAAAVI ASARQQVIQG GGVPPSLSGT LEKVRSEAKR VPPPLNSMYE ALATSTSSFV GSSVRSTLGG NLNATIGDFC RRAILGRYPF TRSATRDVTT DDFARLFATG GTMDEFFRTQ LQTMVDISTV PWTFKQGVDG TPVGGSASLA AFQRAASIRD VFFRAGGNTP GIRLEIKPLD MDASISQMVL DVDGEIVRYQ HGPQIPKAVS WPGTRGTGQA RLQITAAGAQ NTGIVTEGPW ALHRLFDRAQ ILPGNSPERF TAIFTIDGRK LRMEVTTSSV LNPFRLKAME EFECPDRL
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