Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_3824 |
Symbol | |
ID | 5749407 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 4211368 |
End bp | 4214001 |
Gene Length | 2634 bp |
Protein Length | 877 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641298922 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001564840 |
Protein GI | 160899258 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.668765 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.248455 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGCTG TCGCAGGCAG ATCCGGCCCT TGGCTGCCCG GCGCACGCTA CGGAAACCTC TGCATGCCCG CCTTCAGGCT CTCACTTCGC ACGGCAGTCA CAGCCCCCTT CATAGCGGTG TTCGTGGTCA CGGCCGGGCT ATTGGCGGCA TGGCAGCAGC GCCAGGTGGA CCAACTCATC AACCGCGAAA GCCTGCGGCT GCTCGACTCC CTGTCCACCA CCACGCGCCA CCAATTGGCC GATTACCTGG AGACCCCGCT GCGCGTGCAG CAGGCCCTGG CCGAGACCGT GGCCCGGCAG GCGCTCTACA CCCCCGGCGA CCTGCGCCCC ATCTATGACT ATCTGACACG CTCATTCACC GAGCTGTATG CCCAGCACCA CCAGATCAGC CTGTTGAGCT TTGGCGGCGT ACAAGGTGAA TACACGGGCG TGCGGCTGGA GCCCGATGGC CGCTACCGCC TGATTCTTCA GGACCGCAGC ACCCAGGGCG CCCTGCAGAT CTTCGAGGGG CTGGAGCCCG GCCCGCCCAT GTCCAGCCTT GCCGGCTACG ACCCCCGCGT GCGCCCCTGG TACCAGCCTG CCATCCACAA AGACGGCCCG CACTGGTCGC CCATCTACAC GGTGACTGGC GACCGGGGCG ACACCACGAT TTCCGCATCC ACGTCCGTGC GGGTGTCCGG CCAGCTGGCC GGCGTGGTGG CCGCCGATGT GCGGCTGAGC AGCATGAACC GCTTTCTGCG CGATGAGCCC TTGCGTGGCA ACGGCCATAT CGCCGTGGTC GACGCACAGG GCTACATGGT GGCGCACTCG TCCGAGCTGT CGGTGCTGAA ACGGCGCGAA GGCCCCTATG ACCCACCCGT GCGCCTGCGG CTGTCCGAAA GTCCCGATCT TGCGCTGCGC AGCCTGGCCG CCCTGTTGCC TGCGCATCTG AGCGCGGATT CATCGGCGCC AGCGGGTCCC GAGAAAACCA TCAACCTGAG CTTCAAGGAA CAGGGGCAGA TCTACCACGG CCAGGTCACC GCATTCCACG ATGCACGCGG CATCGACTGG CGGATCCTGG TGCTGCAGCC CGAATCCGAT CTGGTCAGCA GCATGCGGGC GGACAGCCGC CATGCGCTGG TCCTCGCTTT CGGCCTGGCC TTGCTGGGAC TGGGGCTGGG CGTGTGGTGC CTGCGCCGGG CGCTGCGCCC CCTGGCGGTG ACGGCCGATG CGGCCAACCG CCTGGCCAAG GGCGACTGGA GCGCGGTAGG GGCGCTGCCG GATACGTCCC TGGTCGAGAC ATCGTCCCTG GTCTCGGCCT TCCACAACAT GGCGCAGCGG CTGCAGGAAT CGTTCGAGCA CATGCGCACC CTGCTGCAGT ACGACAGCCT GACGCAGCTG CTCACGCGCG CCGGCCTGAT CGAGCAGGCC GATGCGGCGG CAGCCGCCAA CACGCCCTGC CCTGCCGCGC TGTGCCTGCT GGAGCTGCAG AATTTCCGCA GCGTCCGCGA CGATGTGGGC CACGGCACGG GCGAGCAGTT GCTGCGGGCC GTGGCCGAGC GGCTGCGCAA CCACCATCTG CAGTTTCCTG CCCTGCTGGC GCGCACGGCC AGCAACGAGT TCGCCATGCT GTGGCTGCAT GACTGCACGC CGCAGCAGAT GCAGGACAAA TGCCGCCATC TGCTGGAAAT CTTCGACCAG CCATTTTCCG TGGGCAAGGA CGACATCGTG CTGCGCGCCT GCGCGGGCGC CGTCAGCGGC GAGCTGCTGC CGGGCGTGCT GCCCGAGTGG CTGCGCAACG CCAGCATTGC GCTGGGTGAG GCGCAGCGCG GCTCGCACCC CTTCCTGCTG TTCGAGCCCA GCCTGGCGCA GAAAATGCTG GGCCGCACGC AGCTGGCCAT GGAGCTGCGC CAGGCGGTGG AGCGCAACGA GCTGCGCGTG TTCTACCAGC CCGTGGTGGA CCTGGCCACA GGCAGCATGG TCGGCGCCGA GGCCCTGGTG CGCTGGAACA GCCCGACGCG CGGCATGGTG CCGCCCGGCG TCTTCATTCC GGTGGCCGAG GAGTCGGACC TGATCCTGAG CGTGGGCGAA TGGGTGCTGC GCACGGCGGC GCACGACATC GCCTCCCACC TGCCCCGGCT GCCCGCTGAC TTCGAGCTGC ACGTCAACAT GTCGGCACGC GAGCTCATCC AGTCCGACTT CGCCTCCACG CTGGAGCAGG CACTGGCCAC CAGCGGCCTG CCCGCCCGGC TGCTGACCCT GGAGCTGACG GAGTCCATGC TGCTGGACGA CAGCGACGCC ACGCTGCAGC GCATTGCCGC CATCCGCGCG CTGGGCGTGA AGATCGCCAT TGACGACTTC GGCACCGGCT ACTCCTCCCT GGCCTATCTC AGCCGCCTGC GCTTTGACTG CATCAAGATC GACCAGAGCT TCGTCGGCCA GTTGCCGGAG TCCGAATCCG ACAAGTCCAT CGTGACCGCC GTGCTGCGCA TCGCCCAGGG CTTCGGCGTC AAGGTCGTGG CCGAAGGCGT GGAGGAGCAG GCCCAGGCCA AGCTGCTGCA TGCCCTGGGC TGCAAGCATG CACAGGGCTA TCTGTTCGAG CGGCCGGTGC CGCTGGCGCA GATGCTGGAG TACCGCGCTC CCTGGCATGA GTGA
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Protein sequence | MAAVAGRSGP WLPGARYGNL CMPAFRLSLR TAVTAPFIAV FVVTAGLLAA WQQRQVDQLI NRESLRLLDS LSTTTRHQLA DYLETPLRVQ QALAETVARQ ALYTPGDLRP IYDYLTRSFT ELYAQHHQIS LLSFGGVQGE YTGVRLEPDG RYRLILQDRS TQGALQIFEG LEPGPPMSSL AGYDPRVRPW YQPAIHKDGP HWSPIYTVTG DRGDTTISAS TSVRVSGQLA GVVAADVRLS SMNRFLRDEP LRGNGHIAVV DAQGYMVAHS SELSVLKRRE GPYDPPVRLR LSESPDLALR SLAALLPAHL SADSSAPAGP EKTINLSFKE QGQIYHGQVT AFHDARGIDW RILVLQPESD LVSSMRADSR HALVLAFGLA LLGLGLGVWC LRRALRPLAV TADAANRLAK GDWSAVGALP DTSLVETSSL VSAFHNMAQR LQESFEHMRT LLQYDSLTQL LTRAGLIEQA DAAAAANTPC PAALCLLELQ NFRSVRDDVG HGTGEQLLRA VAERLRNHHL QFPALLARTA SNEFAMLWLH DCTPQQMQDK CRHLLEIFDQ PFSVGKDDIV LRACAGAVSG ELLPGVLPEW LRNASIALGE AQRGSHPFLL FEPSLAQKML GRTQLAMELR QAVERNELRV FYQPVVDLAT GSMVGAEALV RWNSPTRGMV PPGVFIPVAE ESDLILSVGE WVLRTAAHDI ASHLPRLPAD FELHVNMSAR ELIQSDFAST LEQALATSGL PARLLTLELT ESMLLDDSDA TLQRIAAIRA LGVKIAIDDF GTGYSSLAYL SRLRFDCIKI DQSFVGQLPE SESDKSIVTA VLRIAQGFGV KVVAEGVEEQ AQAKLLHALG CKHAQGYLFE RPVPLAQMLE YRAPWHE
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