| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3743 |
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| Symbol | |
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| ID | 5749326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 4112250 |
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| End bp | 4113611 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641298842 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001564760 |
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| Protein GI | 160899178 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00143217 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.519955 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACA CCAACAAGCA AGCACCCAGC CCTGCCGCCG CACCGGCCGC AGCCTCGCCC
GTGGCCAATC CGCAGGGCCG CCGCAAGGGC CTGACCCTCG TCGCCGCCGC CGTTGCGGTC
GCCGCCGTCG CCTGGGGCGG CTGGCACTGG ATGGTGGCCC GCAACTACCA GACCACGGAC
AACGCCTATG TGGCGGGCAA CGTGGTGCAG ATCACGCCGC AGATCGGCGG CACGGTCATC
AGCATCGGCG CCGACGACAC CGACTACGTC AAGCCCGGCC AGCTGCTGGT GCAGTTGGAC
TCGGCCGATG CCCTGGTCGC CCTGTCCCAG GCCGAGTCGC AACTGGCCCA GACCGTGCGC
CAGGTGCGCA CGCTGTACGC CAACAATGCC CCCCTGGTCG CCCAGGTGGC CCAGCGCGAG
GCCGACCTGG CCCGCCTGCA GGCCGACGCC GCCCGCGCCC GCGAGGACGT GGACCGCCGC
CGCCCGCTGC TGGCCACGGG CGCCGTGGGC AAGGAAGAGT TCGACCATGC CCAGTCCCTG
GCCCGCACGG CAGGCAACGC CGCCTCTGCA GCAGAAGCCG CCGTGCGCGC CGCCAAGGCA
CAGCTGACCG CTGCCGAAGC CCAGACCAAG GGCAGCAGCG CCGAAGAGCA CCCCAGCGTG
ATCGCCGCTT CCGCCAAGGT GCGCGAGGCC TATCTGGCGC TGCAGCGCAC GCGCCTGGTC
TCGCCCGTGG AAGGCTATGT GGCCAAGCGC GGCGTGCAAC TGGGCCAGCG CGTGGCCTCG
GGCGCGCCGC TGATGACCGT GGTGGGCCTG CACAACCTCT GGGTGGATGC CAACTTCAAG
GAAAGCCAGC TGGCCCAGCT GCGCATAGGC CAGAAGACCG AGCTGACGGC CGATGTCTAC
GGCGACAAGA TCAGCTACCA CGGCACCGTG GTGGGCATGG GCGCAGGAAC CGGCGCGGCC
TTCTCGCTGC TGCCCGCGCA AAACGCCACC GGCAACTGGA TCAAGGTGGT GCAGCGCGTG
CCCGTGCGCA TTGCGCTGGC GCCGGAAGAC CTGGCCCAGC ACCCGCTGCG CGTGGGCCTG
TCCATGGAAG TCAAGGTGGA CGTGCGCGAC CAGCAGGGTG AAGTCCTGGC AACCGCCACG
CGCAATGCCC CCGTGGCCCA GACCTCCATC TACGACATGG CGTTGCCCCA GGCCGAGGAG
CGCATCGCCC ACATCGTGGC AGGCCAGAAC GTGGCGCCGC TCAAGCAATT GCCCGAGCTG
CCACCCGTTG CCATGGCCGA TGCGCAAGAC AGGGCACAGG GCAAGGCGCC AGCCGCAGTG
GCCTCCGCGC CGGTTGACGC GCAGGCCACG CAGTCCAAGT AA
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| Protein sequence | MTDTNKQAPS PAAAPAAASP VANPQGRRKG LTLVAAAVAV AAVAWGGWHW MVARNYQTTD
NAYVAGNVVQ ITPQIGGTVI SIGADDTDYV KPGQLLVQLD SADALVALSQ AESQLAQTVR
QVRTLYANNA PLVAQVAQRE ADLARLQADA ARAREDVDRR RPLLATGAVG KEEFDHAQSL
ARTAGNAASA AEAAVRAAKA QLTAAEAQTK GSSAEEHPSV IAASAKVREA YLALQRTRLV
SPVEGYVAKR GVQLGQRVAS GAPLMTVVGL HNLWVDANFK ESQLAQLRIG QKTELTADVY
GDKISYHGTV VGMGAGTGAA FSLLPAQNAT GNWIKVVQRV PVRIALAPED LAQHPLRVGL
SMEVKVDVRD QQGEVLATAT RNAPVAQTSI YDMALPQAEE RIAHIVAGQN VAPLKQLPEL
PPVAMADAQD RAQGKAPAAV ASAPVDAQAT QSK
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