Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_3730 |
Symbol | |
ID | 5749313 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 4097699 |
End bp | 4099612 |
Gene Length | 1914 bp |
Protein Length | 637 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641298829 |
Product | TonB-dependent receptor |
Protein accession | YP_001564747 |
Protein GI | 160899165 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0159073 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0113192 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACACCC TCGCCCTCGC GCGCGCCCCT GGCGCCGCTC TTCGCTCGCC CTCGGCGTTC CCCGTACTGC GCACGTTGTC CGCCCTGGCT GCGGCCTCGC TGCTGGCCTG CCAGGCCCAA GCACAGGTAC AACAGGCACA ACAGGCGCAG CGCGCACAGA CCTCCCAGCT CGATACCGTG GTCGTCACCG CCTCGCGCAG CGAGCAGCCC CTGCGCACCG TCACGGCCGA CATGACCGTG ATCGACGCCG AGACCATTGC CCGCAGCGGC GCCACGGGTG TGGCGGACCT GCTGGTGCAG GTGCCGGGCG TGCAGATCAA CCGCAATGGC GGGCCGGGCC AGGTCACCTC GGTCTACCTG CGCGGCACCA GCAACCAGCA CACTGCCGTG TTCATCGACG GCGTGCGCTA CAGCTCGCAG GAGCTGCAGG GCGGCGCGGT CTGGTCCACC CTGCCGCTGG CGCAGATCGA GCGCATCGAA GTGCTGCGCG GCCCGGCCGC CGCCATCTAT GGCTCAGACG CCATGGGCGG CGTGATCCAG ATCTTCACCA AGCGGGCGGA CGGCCAGACC CGCGCCTATG CCGAGGCTGG CATAGGCAAC CAGGGCACCA GCAAGCTGGC CACGGGATTT CAGGGCGGAG CCGACGGCTT CACCTACGGG CTGAACCTGG CTGACGAGCG CAGCGACGGC TTCGACGTCT ACCCCGGCAA CACCTTCTCG CCCAACCCGG ACAAGGATGG TTACAGCAAC ACCTCGCTGG GCCTGAACGC GGGCTACAAA ACGGGCATCC ACCAGATCGA TGCCAGCCTG CTGTACAGCC GCCTGCGCAC CCACTACGAC CAGAGCCCGC CGCCGTTCGA CGACTACGAC GTGGTCAAGA ACACCACCGG CAGCCTGCGC TGGCAGGCCG GCTGGAACGC CATGTACAAA AGCGTGGTCC AGATCTCCCA TACCGACAGC CAAAGCGACC GCCACACCCA GTCGCCCGAA AGCGCCAAGG GCCGCTCCAC CAACTACCTG CTGCAGAACC TGTTCACGCT GGGCCAGCAC CGTTTCAACA TCGGCCTGGA GCGCCGCGAG GACAAGCTGG ACACGCAATA CGCCTGGACG CAGAACACCG ACAGCCGGCG CGTGCAGAAC TCCCTGTCGG CCGGCTGGCG CCTGACCGAG GGCCGCCACC AGTTCGACGC CAACCTGCGC CACGACCAGG TGCGCGACCA GCAGAACAAG ACCACGGGCG GCCTGGGCTA CGGCCTGCAG ATCGACGAGC GCTGGCGCTG GGTGGCATCG GCCGGCACGG CCTTCCGCAC GCCCACGCTG TACGAACGCT TCACGGGCCA GGCGGCGGCC GACCTCAAGC CCGAAAGCAG CACCAACGTG GAAACGGGCC TGCACTATGC GGCCGGTGCC AACCGCCTCT CGGCCGTGGT CTACCGCAAC AAGTTCAAGA ACCTGATCAC CTACGACTGG AACAGCGCCG TTCCCTGCAA CTGCTACCGC AACTGGCAGA GCGTGGAGAT CACCGGCCTG ACGCTGGCGG GCAGCACGCG CCTGGGCAGC GCCAATCTGG GCGCCTCGCT GGACTTCATG AACCCCGAGA ACCTGGAGAC CGGCAAGCTG CTGCCCTACC GCTCCAAGCG CATGCTCAAG CTCAACGCCG ACACCCAGGC GGCCGGCTGG ACGCTGGGCG GCGAAGCGCA GCTGTACAGC GGCCGCTACG CAGACGAGGC GAACACCTTC AAGCTGGGGG GATACGGCGT GGTCAACCTC TACGCCCAGC GCCAGCTGAC CAGGCAATGG ACGCTGCTGG CCCGTGTCAA CAACATCGCC GACCGCGACT ACGCCCCCAC GCGCGGCTAT GCCAACGCAG GCCGCACCGT GTTCGTCAGC GTGCGCTGGA CACCTCTGCC CTGA
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Protein sequence | MHTLALARAP GAALRSPSAF PVLRTLSALA AASLLACQAQ AQVQQAQQAQ RAQTSQLDTV VVTASRSEQP LRTVTADMTV IDAETIARSG ATGVADLLVQ VPGVQINRNG GPGQVTSVYL RGTSNQHTAV FIDGVRYSSQ ELQGGAVWST LPLAQIERIE VLRGPAAAIY GSDAMGGVIQ IFTKRADGQT RAYAEAGIGN QGTSKLATGF QGGADGFTYG LNLADERSDG FDVYPGNTFS PNPDKDGYSN TSLGLNAGYK TGIHQIDASL LYSRLRTHYD QSPPPFDDYD VVKNTTGSLR WQAGWNAMYK SVVQISHTDS QSDRHTQSPE SAKGRSTNYL LQNLFTLGQH RFNIGLERRE DKLDTQYAWT QNTDSRRVQN SLSAGWRLTE GRHQFDANLR HDQVRDQQNK TTGGLGYGLQ IDERWRWVAS AGTAFRTPTL YERFTGQAAA DLKPESSTNV ETGLHYAAGA NRLSAVVYRN KFKNLITYDW NSAVPCNCYR NWQSVEITGL TLAGSTRLGS ANLGASLDFM NPENLETGKL LPYRSKRMLK LNADTQAAGW TLGGEAQLYS GRYADEANTF KLGGYGVVNL YAQRQLTRQW TLLARVNNIA DRDYAPTRGY ANAGRTVFVS VRWTPLP
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