Gene Daci_3729 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3729 
Symbol 
ID5749312 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp4096755 
End bp4097693 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content71% 
IMG OID641298828 
Productperiplasmic binding protein 
Protein accessionYP_001564746 
Protein GI160899164 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0685211 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.00414028 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCACCTGC TTGTGCGCCT GCCCCGCCTT CTGCTGCTGA TCGCCGTGCT GGCCTGCGCG 
GGCGGCACAG GCAACGCCTT TGCGCAAAAG GCGGCGGATG CGGGAACGGG CGGGGCAACC
ACCGCCTACA CCGTCACCGA CATGCGCGGC CGTCAGGTGC GCCTGGAGCG CGTGCCGCAG
CGCATCGTCT CGCTGCTGCC CTCGCTGACC GAATCGCTGT GCGCGCTGGA CGCCTGCGAG
CGCATCGTGG GCGTGGACGA GTTCTCCAAC CACCCGGCGC GCGTGGCCGC CCTGCCCAAG
CTGGGCCACA CCTTTGCCCC GCTGGTCGAG GCCACCGTGC GGCTCAGGCC CGACGTGGTG
CTGATGGCGT ACTCCGCACC CGTCATCGCA CAGCTGGAGC GCTTCGGCAT TCCCGTGCTG
GCACTGGACG CCAACGACAT GGCGCAGCTG GAGCAGGTAC TGCACAAGCT CGACCAGCTG
CTGCAGGTGC AGCGCGCCAA CGCCCTGCTG GCGCGCATGC AGGCCGAGGT GGACCAGCAG
GCCAAGGCGC TGGCGGCGCT CACGCCCGCC GGGCAGAAGG TGTATTTCGA AGTGGACGCC
ACGCCTTACG CGGCAGGGCC GGACTCCTTC ATAGGCCAGC TGCTGCAGCG CCTGGGCGCG
CGCAATGTGC TGCCGCAGAA CCTGGGGCCC TTCCCCCGCA TCACGCCCGA ATACGTGCTG
CGCCAGCAGC CAGAACTCAT CATCCACACG CCGCAGACGC CATCGGCCAG CTTTGCCACC
CGCCCCGGCT GGAGCCGCAT GCCCGCCGTG CGCTCGGGCC GCATCTGTGC ATTGGACCTG
GTCGAAACGG ACGTGGTCTC CCGCCCCGGC CCGCGCCTGG GCGAGGCAGC GCGGGCGCTG
GGCCGCTGCC TGCAGATGCC GGGCGCAGCG CCGCGTTGA
 
Protein sequence
MHLLVRLPRL LLLIAVLACA GGTGNAFAQK AADAGTGGAT TAYTVTDMRG RQVRLERVPQ 
RIVSLLPSLT ESLCALDACE RIVGVDEFSN HPARVAALPK LGHTFAPLVE ATVRLRPDVV
LMAYSAPVIA QLERFGIPVL ALDANDMAQL EQVLHKLDQL LQVQRANALL ARMQAEVDQQ
AKALAALTPA GQKVYFEVDA TPYAAGPDSF IGQLLQRLGA RNVLPQNLGP FPRITPEYVL
RQQPELIIHT PQTPSASFAT RPGWSRMPAV RSGRICALDL VETDVVSRPG PRLGEAARAL
GRCLQMPGAA PR