| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3679 |
|---|
| Symbol | |
|---|
| ID | 5749262 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 4038892 |
|---|
| End bp | 4041831 |
|---|
| Gene Length | 2940 bp |
|---|
| Protein Length | 979 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641298778 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001564696 |
|---|
| Protein GI | 160899114 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.138825 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0339746 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTCA CAGCAGCGGC GGTGCCTGCG GCACGCTTCC TGCAGGGAAG CCCTATCGCC
GCCACCCTTC AGCCATGGCC TGCACGACGG GGCAGATCAT TCATTGCCGA TTTGTTTGAT
TCATATTCGA GAAATTGGCG GAAATATGCA TTCTTTTGCC ATTTTCCCAA TAAGGTTCTC
GACTTCCATA TTTTCAATGG CACATTTCGA GCGTTCGTCG ACCGATTCAT CGGTCATTGG
GGCCCCAAAT TCAGCCCATT GCACGGCCAG TTCAACCCCA TAGTCCCTGG GAGGGCGAAG
TCCCACAAGA ATTGCCGCAC CGAGGACTGC AGCCTCAACA TCGGTCGCAC CAGCAGTCAC
AGCTATGATC CCCAGGCAGC ATCGCCGTCC CCGCCAGCGG CGAGCTGCCC CCTCTCCTCC
ACCCAACGCC CCGCTCCATC CCCCCCCATG ATCCAAGAGT CCGAAGAGAT TGCCCTGCTT
CGCGAGGAAA ACGCCCGGCT GCGGGCGCAA CTGGCGATTG CCACGGCGGG CCATGCCAGC
GCCGTACAGG GCGCGGGCGC CAGCGATCAG GACCCCTTCG ATGCGCAGGT GGCAGACCAG
AAGACGCTGT TCTCGGATTT CATCGAGCAT CTGCCGATAG GCCTGTGCCT GGTGAGCAAG
GGCGGCAAGG TGCTGATGTC CAACCCGGCC TACCGCCATT TCCTGCCGGA GACCCCCATC
CCTTCGCTGC TGTCGGCCGA GGAAGACCGG GGGCGCTGGC GCAGTTGGGA CAAGGACGGC
AAGCCCGTCC CCCGTGACCA GTTTGTGGCC GCCCGCGCGT TCCGCGGTGA GCTGGTGGTG
CCGGGCGTTG ACTGTGTCTA TGACACGCCC CAGGGGCTTG AGGTATGGAC GCGCGTGTTC
GGGGTGCCGC TGCGCAATGC AGACAAGGAA GTCGTGGCCA CGGCCATCGC CATTTTGGAC
ATCGATGCGG AACGACGCGC GCTGGACATG TTGCGCCAGA GCGAGGAACG GCTGGATGCG
CTAGTGCGCT CCTCCTCGGA AGTGCGCTAC TCCATCAGTG CGGACTGGAG CGAGCTGCAC
CAGCTGGCAG GCGGCGGGTT CATCCCCGAC ACGCAGGCGT CCAACACGAA CTGGCTGGAA
GACTACATCC CCCCGGAGGA CCGCGACCTG GTGCGCGCGG AGATCGCGCG GGCCATCCGC
ACGAAGACGG ACTACGTGAT CGAGCACCGG GTGAACCGGG TCGATGGCAG CGTGGGCTGG
GCGTTCTCGC GCGCCGTGCC GCTGTTCGAT GCCGCAGGCG CCATCACCGG CTGGCTGGGA
GCGGCCTCCG ACATCACCGA GCGCAAGCAG GCGCAGGCCG CGCTGGAGCG CTTGAATGCC
ACGCTGGAGG AACAGGTGGC AGAGCGCACG GCCGACCGCA ACGCGCTGTG GCAGCTGTCT
TCCGACATCA TGATGCGCTG CACGTTCGAG GGCATCATCA CTGCGGTCAA CCCGGCCTGG
ACCGAGGTAT TGGGCTGGCG TGAAGACGAG CTGCTGGGCA CCACGCTTTT TCATCTCATC
CATCCGGAGG ATCTGGCGCG CACCATCCAG GACACGCAGG AGCTGGCCAC AGGCATGGCG
CATGCCCGGT TTGACAACCG GTATCGCCAT CGGGACGGGA GCTACCGCTG GATCTCCTGG
TCCACCCGTT CGGCGGCAGG CCGCATCAAT GCGGTGGGCC GCGACATCAC CTCCGAAATG
GCCAAGGCCG AAGCGCTGGC CAAGGTACAG GAGCAACTGC GCCAGTCGCA GAAGATGGAG
GCCGTGGGCC AGTTGACGGG CGGTCTTGCG CACGACTTCA ACAACCTGCT GGCGGCCGTC
ATGGGCAATC TGGAGCTGCT GCAGCGGATG CTGGCGCGCG GCCAGGTGGA CAACCTCACG
CGCTTCATCC ATGGAGCGCA GGGGGCGGTG CGGCGCGCCG CCACGCTCAC GCAGCGGCTG
CTTGCGTTCT CGCGCCGGCA GATCCTGGAC TCCAAGCCCA CCGATATGGC CGCGCTCCTG
GCCGATTGGG AGGACCTGCT GCGAAGGACG GTGGGCGCCA GCGTGGACAT CGACATCGTG
CCGGCAGCCC ATCTGTGGCA TGCGCAAATC GATGGAACGC AGCTGGAGAA CGCCATCCTG
AACCTGTGCA TCAACGCCCG CGATGCCATG CCCGAAGGCG GCCGGCTGAC CATCAGGACA
GCCAATATCG AGCTTGAAGA GGCGGCAGCC CGGGAGTGGG ATCTTCCGCC GGGCGGCTAT
GTGTCGCTGT GCGTCACCGA TACGGGCACC GGCATGTCGG AGCAGACCAT TGCGCGCGCC
TTCGAGCCGT TCTACACCAC CAAGCCGGTG GGCCATGGAA CAGGGTTGGG GCTGTCGATG
ATCTACGGCT TCGCACGGCA ATCGGGAGGA GCGGTCAGGA TCTTCTCCCA GCCGGGCCAG
GGCACCACCG TCTGCCTGTA TCTGCCCCGG TGCGACGCCG CACCCGTTGC AGAACGCGCG
GTCGATGCGG CACGGCAGGT GGTCGTTCCT GCCCAAAGGA CCTTGCTGGT CGTGGATGAC
GAAGCCCCGA TCCGCCATCT CATCGACGAG GCGCTTGTCG ATCTGGGCTA CACGGTGCTT
GCCGTGGCAG ATGCAGCCGC CGCGCTACAG GTACTGCTTG CCGGAACCCG GGTGGACATG
CTGATCACGG ACATGAGGCT TCGCGGCGGA ATGAACGGCA AGCAGCTTGC CGACGAGGCA
CGCCTGGCCC GTTCCGACCT GCCGGTGCTC TTCATCACCG GGTTCACCGA GGCATCTCCG
CTCAGCCAGG AAAACCTGCA CCCCGGTACG CAGCTTCTGA CCAAGCCGTT CACATTGGAT
GCGCTGGCGC TCAAGGTGGC GGATATTCTG GGCAGTACCG ACGCTGTGCC ATCGGACTGA
|
|---|
| Protein sequence | MKVTAAAVPA ARFLQGSPIA ATLQPWPARR GRSFIADLFD SYSRNWRKYA FFCHFPNKVL
DFHIFNGTFR AFVDRFIGHW GPKFSPLHGQ FNPIVPGRAK SHKNCRTEDC SLNIGRTSSH
SYDPQAASPS PPAASCPLSS TQRPAPSPPM IQESEEIALL REENARLRAQ LAIATAGHAS
AVQGAGASDQ DPFDAQVADQ KTLFSDFIEH LPIGLCLVSK GGKVLMSNPA YRHFLPETPI
PSLLSAEEDR GRWRSWDKDG KPVPRDQFVA ARAFRGELVV PGVDCVYDTP QGLEVWTRVF
GVPLRNADKE VVATAIAILD IDAERRALDM LRQSEERLDA LVRSSSEVRY SISADWSELH
QLAGGGFIPD TQASNTNWLE DYIPPEDRDL VRAEIARAIR TKTDYVIEHR VNRVDGSVGW
AFSRAVPLFD AAGAITGWLG AASDITERKQ AQAALERLNA TLEEQVAERT ADRNALWQLS
SDIMMRCTFE GIITAVNPAW TEVLGWREDE LLGTTLFHLI HPEDLARTIQ DTQELATGMA
HARFDNRYRH RDGSYRWISW STRSAAGRIN AVGRDITSEM AKAEALAKVQ EQLRQSQKME
AVGQLTGGLA HDFNNLLAAV MGNLELLQRM LARGQVDNLT RFIHGAQGAV RRAATLTQRL
LAFSRRQILD SKPTDMAALL ADWEDLLRRT VGASVDIDIV PAAHLWHAQI DGTQLENAIL
NLCINARDAM PEGGRLTIRT ANIELEEAAA REWDLPPGGY VSLCVTDTGT GMSEQTIARA
FEPFYTTKPV GHGTGLGLSM IYGFARQSGG AVRIFSQPGQ GTTVCLYLPR CDAAPVAERA
VDAARQVVVP AQRTLLVVDD EAPIRHLIDE ALVDLGYTVL AVADAAAALQ VLLAGTRVDM
LITDMRLRGG MNGKQLADEA RLARSDLPVL FITGFTEASP LSQENLHPGT QLLTKPFTLD
ALALKVADIL GSTDAVPSD
|
|---|
| |