| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3615 |
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| Symbol | |
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| ID | 5749199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 3977212 |
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| End bp | 3978381 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641298716 |
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| Product | twitching motility protein |
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| Protein accession | YP_001564634 |
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| Protein GI | 160899052 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.326241 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.111826 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCACGA TGGAGAGGAT TTTGCGCCTG ATGGGCGAGA AGCAGGCGTC CGACGTCTAC
CTGGCGGTCA ACGCGCCGGC GCTGATCAAG ATCAACGGCG AATGCGTGCC CATCAACAAC
CAGCTGCTGC CGCCCGACGC GCCGCGCAGC CTGCTGGCCG AGATCGTGCC GGCCGAGCGC
CTGCAGGAGC TGGACGAAAC GGGCGAGCTC AACATGGGCG TGCCGCTGCG CGGCGTGGGG
CGTTTTCGCG TCAGCGCCAT GCACCAGCGC GGCAGCTGCG CCGTGGTGAT CCGCTTCATC
GCCCAGCACA TTCCGGCCAT GGACACGCTG AACCTGCCGC CCGTGCTGGG CGAGCTGATC
ATGCAAAAGC GCGGCCTGCT GCTGGTCGTG GGCTCCACGG GCTCGGGCAA GAGCACGACG
CTGGCCTCGA TGATCGATGC GCGCAACGAA AAGCTCACGG GCCACATCCT CACCATCGAG
GACCCCATCG AATACCAGTT CCGCAACAAG CGCTCCATCG TCAACCAGCG CGAAGTGGGC
TCGGACACGG CATCGCTGCA GATCGCGCTC AAGAACGCGC TGCGCCAGGC CCCCGACGTT
ATCCTGATCG GCGAAATCCG CGACCGCGAG ACCATGTCCT CGGCCATGGG CTTTGCGCAG
TCGGGCCACC TGTGCCTGGC CACGCTGCAC GCCAACAACA GCTACCACGC GCTCAACCGC
ATCCTGTCCT TCTTCCCCGA GGAAATCCGC CCCACCATGC TGGGCGAGCT GTCTGCTGCG
CTCAAGGGCG TGATCTCCCA GCGCCTGGTG CGCACCGTGG ACGGCGGCCG CATGCCGGCC
GTCGAGGTCA TGCTCAACAC CAAGCTGATC GCCGACCTCA TCGAGCGCGG CAACTTTTCG
GGCGTCAAGG AGGCCATGGA AAAATCCATG GCCGAAGGCT CGCAGACCTT TGAAGAGGCG
CTGGCGCAGC TGGTCCGCTC CGGCCGCATC GACCGCGCCG AAGCCCTGGC CTTCGCCGAT
TCGCCCACCA ACCTGATGTG GCGCCTGGAA AACGACGTGG TCAAGGCCAG CCATGCCGCG
CCGTCCAGCC AGTTCGCCGA ACTGGCCACG CCCGGCGAGG ACGACATGCC CTCGTTCACG
GAAATCATGC TGGAAGTCAA GCCGAACTGA
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| Protein sequence | MGTMERILRL MGEKQASDVY LAVNAPALIK INGECVPINN QLLPPDAPRS LLAEIVPAER
LQELDETGEL NMGVPLRGVG RFRVSAMHQR GSCAVVIRFI AQHIPAMDTL NLPPVLGELI
MQKRGLLLVV GSTGSGKSTT LASMIDARNE KLTGHILTIE DPIEYQFRNK RSIVNQREVG
SDTASLQIAL KNALRQAPDV ILIGEIRDRE TMSSAMGFAQ SGHLCLATLH ANNSYHALNR
ILSFFPEEIR PTMLGELSAA LKGVISQRLV RTVDGGRMPA VEVMLNTKLI ADLIERGNFS
GVKEAMEKSM AEGSQTFEEA LAQLVRSGRI DRAEALAFAD SPTNLMWRLE NDVVKASHAA
PSSQFAELAT PGEDDMPSFT EIMLEVKPN
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