Gene Daci_3575 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3575 
Symbol 
ID5749159 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3921229 
End bp3922773 
Gene Length1545 bp 
Protein Length514 aa 
Translation table11 
GC content71% 
IMG OID641298676 
Productmajor facilitator transporter 
Protein accessionYP_001564594 
Protein GI160899012 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.211947 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.0378977 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGTTCA CAACGCAAAC CCAGAACCCC GTTTCGGGGC ATCTTCCAAA ATCCCAGTCG 
GCCGATCCGC GCCGCTGGCT GGTGCTGGCC ATCGTCTCGG TGGCGCTGCT GCTCATCGTC
ATCGACATGA CGGTGCTCTA CACGGCGCTT CCGCGCCTGA CGCATGACCT GGCGGCCACG
GCCTCGGCCA AGCTGTGGAT CGTCAACATC TACGCGCTGG TGGTCTCCGG CCTGCTGCTG
GGCATGGGCA CGCTGGGCGA CAGGCTCGGC CACAAGCGGC TGTTCATGGC CGGGCTGTGC
GTGTTCGGCG TGGCATCGCT GTGCGCGGCC TTTGCGCCCT CGCCCGCCTT GCTGATTGCA
GCGCGTGCGC TGCTGGGCGT GGGCGCGGCC ATGATGATGC CGGCCACGCT GTCCCTGATC
CGCCTGAGCT TTGCCGATGA GCGCGAGCGC GCGCTGGCCA TCGGCATCTG GGCCTCGGTG
GCCTCGGGCG GTGCGGCCTT CGGGCCGGTG GTGAGCGGGC TGCTGCTCGA ATACTTCTGG
TGGGGCTCGG TGTTCCTGAT CAATGTGCCC ATCGTGCTGC TCGCCCTGCC CCTGGCCGGC
TGGCTGATTC CCGCAGGCAC GGCCACCTCG CAGCGGCCCT GGGACTTCAT CGGCTCGTTG
CAGGTCATGG CAGGCCTGGT GGGCAGCACC TACGCCATCA AGGAAGCCGG CAAACAGTCG
CCCGACTGGG CCCTGGCCGC CGTGGCTCTG GTGCTGGGCC TGGGCTTTCT CGCGCTGTTC
GTGCGGCGCC AGCGCCGCAG CAGCGACCCG CTGCTGGACT TCGCGCTGTT CCGCAACCCG
GCGTTTGCCA CGGCCGTGGC CTCGGCCCTG GTGGCAGCGG CCGCGCTGAT CGGCATGGAG
CTCGTGTTCA GCCAGCGCCT GCAACTGGTG CAGGGACTGT CGCCACTGCA GGCCGGCCTG
GCCGTGCTGC CGCTGCCGCT GGCCGCCTTT GTCGCAGGCC CCGTGGCAGG CAACTGGCTG
CCACGGCTGG GCGGCGCGCG CATGCTGCCG GCAGCGCTGC TGCTGTCGAG CCTGGGCATG
GGCGGCTATC TGCTGGTCCA CGACATGGGC TGGTGGCCAC AGGCGGCAGC GCTGGCCGTG
CTGGGCCTGG GCATAGGCGC GGCCATGACC ACGGCGTCGA GCACCATCAT GCAAAGCGCT
CCCGCGGACC GTGCCGGCAT GGCGGCCTCG GTCGAGGAGG TGTCCTACGA GCTGGGCGGC
GCCCTGGGCG TGACGCTGAT GGGCAGCCTG CTGTCGGCCG TCTATGCAGG CTCATTGCGC
CTGCCGGAGG GCCTGGGCCT GGCCCTGCCC GCTTCCGTGC GCGACAGCCT GGACGAAGCC
CTGCTGGCTG CCGATCAGCT GATGCCTCAG GCCGCGCACC AGTTGACCGA GCTGGCACGC
ACGGCCTTCG GCCAGGGCTT CAGCGCCGTG ATCGCCAGCG CCACGCTGCT GCTGGTCTGC
ACGGCACTGT GGACGGGCTG GCGGCTGCGC GGTCCGCGCC GCTGA
 
Protein sequence
MAFTTQTQNP VSGHLPKSQS ADPRRWLVLA IVSVALLLIV IDMTVLYTAL PRLTHDLAAT 
ASAKLWIVNI YALVVSGLLL GMGTLGDRLG HKRLFMAGLC VFGVASLCAA FAPSPALLIA
ARALLGVGAA MMMPATLSLI RLSFADERER ALAIGIWASV ASGGAAFGPV VSGLLLEYFW
WGSVFLINVP IVLLALPLAG WLIPAGTATS QRPWDFIGSL QVMAGLVGST YAIKEAGKQS
PDWALAAVAL VLGLGFLALF VRRQRRSSDP LLDFALFRNP AFATAVASAL VAAAALIGME
LVFSQRLQLV QGLSPLQAGL AVLPLPLAAF VAGPVAGNWL PRLGGARMLP AALLLSSLGM
GGYLLVHDMG WWPQAAALAV LGLGIGAAMT TASSTIMQSA PADRAGMAAS VEEVSYELGG
ALGVTLMGSL LSAVYAGSLR LPEGLGLALP ASVRDSLDEA LLAADQLMPQ AAHQLTELAR
TAFGQGFSAV IASATLLLVC TALWTGWRLR GPRR