Gene Daci_3565 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3565 
Symbol 
ID5749149 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3912514 
End bp3913188 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content68% 
IMG OID641298666 
ProductLexA repressor 
Protein accessionYP_001564584 
Protein GI160899002 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID[TIGR00498] SOS regulatory protein LexA 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.000173958 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.00714221 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTCGACC ATCCCAAGCT CACCGCCCGC CAGCAACAGA TCCTGGACCT GATCCAGGCC 
GCCATCTCCC GCACGGGCGC GCCTCCCACC CGCGCGGAAA TCGCCAACAC GCTGGGCTTC
AAGTCCGCCA ACGCTGCCGA GGAACACCTG CAGGCCCTGG CCCGCAAAGG TGTGATCGAA
CTGGTCAGCG GCACCTCGCG CGGCATTCGC CTGCGTACCG ACACCGTGCG CAACATCAAT
GCCGCGCGCG GCACCAGCTT CGGACTGCCG CTGTCGGCCC TGGCACCGCT GATGCTGCCC
CTGGTGGGCC GCGTTGCGGC GGGCTCGCCC ATTCTCGCGC AGGAACACAT CGACCAAACC
TATTCCGTCG AGCCCAGCCT GTTCCAGACG CGCCCCGACT ATCTGCTGCG CGTGCGCGGC
ATGTCCATGC GCGACGCGGG CATCATGGAC GGCGACCTGC TGGCCGTGCA GTCCGCACAC
GAAGCCCGCA ACGGCCAGAT CGTCGTGGCG CGCCTGGGTG ACGAAGTCAC CGTCAAGCGC
CTGCGCCGCA CCACGCAGGG CGTGGAACTT CTGCCGGAGA ACCCCGATTA CCCGGTGATC
CGCGTCGCCC CCGAAGAGGC CTTTGCCATT GAAGGCCTGG CCGTGGGGCT GATCCGCAAC
AGCATGTCCA TGTAA
 
Protein sequence
MLDHPKLTAR QQQILDLIQA AISRTGAPPT RAEIANTLGF KSANAAEEHL QALARKGVIE 
LVSGTSRGIR LRTDTVRNIN AARGTSFGLP LSALAPLMLP LVGRVAAGSP ILAQEHIDQT
YSVEPSLFQT RPDYLLRVRG MSMRDAGIMD GDLLAVQSAH EARNGQIVVA RLGDEVTVKR
LRRTTQGVEL LPENPDYPVI RVAPEEAFAI EGLAVGLIRN SMSM