| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3549 |
|---|
| Symbol | |
|---|
| ID | 5749133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 3897432 |
|---|
| End bp | 3898082 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641298650 |
|---|
| Product | integrase catalytic region |
|---|
| Protein accession | YP_001564568 |
|---|
| Protein GI | 160898986 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.032093 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCT CCAGCGGCAA ACAGCACATG TTTGTCGCCA TAGACCGCGT CACAAAATTC
ACGCATGTCG CGTTCTTTGA CAGGGCCACG AAAGCCAATG CAGCACAGTT CCTTCGGCAG
GTGCTTATAG CCTTTCCGTA CCGCATACAT ACCGTTCTGA CGGACAACGG CATGGCCTTT
ACGGGACAAG AACGCTTCAG AGGCGGCATC ACCGACACAT GCATCGGTCA CATCTTTGAA
CGCATCTGCA AGTTCAATGG CGTCGATAAA AGGCACACCA AGCCATATCA CCCCTGGACG
AACGGCATGG TCGAGCGCAT GAACCGGACC ACCAAGGAAT CCACGATCAA GGCCTACGAG
TACGAGGGGC TGGAGCAGCT ACGGGAGCAT GTCCAGGCCT TCATACAAAG CTACAACTTC
GGCAAGCACT TGAAGGCGCT CAGGTGGAAG ACACCATTGC GGGCGATTTG CGAGGCATGG
GAAAAAGATC CAAGCCGCTT TAGACTTCAT CCGCACCATC TCACTGTGGG ACTGAACATC
TTAGTCTGTG GTGTGTTGAT GCCGGTCTCT ATTTTGCGAT TTTGGATATT CTCCAACATG
CTTTCTCTAT CTTATAAGCT GGTTCGCTTT CGGCGCATTC CTTTGTGCTA A
|
|---|
| Protein sequence | MKISSGKQHM FVAIDRVTKF THVAFFDRAT KANAAQFLRQ VLIAFPYRIH TVLTDNGMAF
TGQERFRGGI TDTCIGHIFE RICKFNGVDK RHTKPYHPWT NGMVERMNRT TKESTIKAYE
YEGLEQLREH VQAFIQSYNF GKHLKALRWK TPLRAICEAW EKDPSRFRLH PHHLTVGLNI
LVCGVLMPVS ILRFWIFSNM LSLSYKLVRF RRIPLC
|
|---|
| |